Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0122 ATGTCAAGCTGCAATATCAACAGTGCACAAGAGAAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAATAATCTATATGACATCGTGACCGTTCGATGCGGTCACTGCAGCAATCTCTGGTCTGTAAACATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCAAAGTGGCAGTTCAGCTGATTACAGGGTTGAATTAGGCTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATAATCAAAGGGTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCACTTTGGCCTCATGCTGGAAACCAACAATCTGAAGACTAAGAATGATGGATCTGAGAAGCATCTAATGTCAGTGCCAGGGCTGCACTATTGA 576 41.84 MSSCNINSAQEKLCYIPCNFCNIVLAVSVPCNNLYDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSQSGSSADYRVELGSSSKCNNKMKMRAPIKNPTNDNQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLKTKNDGSEKHLMSVPGLHY 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1057656 1063462 - Sed0009177.1 Sed11g0122 728768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0122 191 SUPERFAMILY HMG-box 103 158 IPR036910 -
Sed11g0122 191 CDD HMG-box_SF 119 155 - -
Sed11g0122 191 Gene3D High mobility group box domain 91 160 IPR036910 -
Sed11g0122 191 FunFam axial regulator YABBY 5-like 103 161 - -
Sed11g0122 191 Pfam YABBY protein 9 165 IPR006780 GO:0007275(InterPro)
Sed11g0122 191 PANTHER PROTEIN YABBY 6-RELATED 9 176 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2037 Sed-Chr7:35501300 Sed11g0122 Sed-Chr11:1057656 8.00E-32 dispersed
Sed11g0122 Sed-Chr11:1057656 Sed11g0124 Sed-Chr11:1057656 7.10E-100 dispersed
Sed11g0122 Sed-Chr11:1057656 Sed11g0123 Sed-Chr11:1057656 5.40E-92 tandem
Sed01g3224 Sed-Chr1:59497608 Sed11g0122 Sed-Chr11:1057656 1.80E-46 transposed
Sed10g1447 Sed-Chr10:30726743 Sed11g0122 Sed-Chr11:1057656 1.80E-95 wgd
Sed11g0122 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 6.90E-71 wgd
Sed11g0122 Sed-Chr11:1057656 Sed08g0677 Sed-Chr8:4823206 3.40E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39882 PF04690 YABBY 4.00E-70 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0122 K25796 - csv:101219877 342.428