Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0123 ATGAAACAGGTGAGTGTTCCATGCAATAATCTATATGACATCGTGACCGTTCGATGCGGTCACTGCAGCAATCTCTGGTCTGTAAACATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCAAAGTGGCAGTTCAGCTGATTACAGGGTTGAATTAGGCTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATAATCAAAGGGTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCACTTTGGCCTCATGCTGGAAACCAACAATCTGAAGACTAAGAATGATGGATCTGAGAAGCATCTAATGTCAGTGCCAGGGCTGCACTATTGA 507 42.01 MKQVSVPCNNLYDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSQSGSSADYRVELGSSSKCNNKMKMRAPIKNPTNDNQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLKTKNDGSEKHLMSVPGLHY 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1057656 1062880 - Sed0009177.2 Sed11g0123 728769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0123 168 CDD HMG-box_SF 96 132 - -
Sed11g0123 168 Pfam YABBY protein 3 142 IPR006780 GO:0007275(InterPro)
Sed11g0123 168 Gene3D High mobility group box domain 67 137 IPR036910 -
Sed11g0123 168 SUPERFAMILY HMG-box 79 135 IPR036910 -
Sed11g0123 168 PANTHER PROTEIN YABBY 6-RELATED 3 153 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Sed11g0123 168 FunFam axial regulator YABBY 5-like 80 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0123 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 9.10E-59 dispersed
Sed11g0122 Sed-Chr11:1057656 Sed11g0123 Sed-Chr11:1057656 5.40E-92 tandem
Sed11g0123 Sed-Chr11:1057656 Sed11g0124 Sed-Chr11:1057656 3.10E-83 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39883 PF04690 YABBY 8.00E-59 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0123 K25796 - csv:101219877 297.36