Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0124 | ATGTCAAGCTGCAATATCAACAGTGCACAAGAGAAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAATAATCTATATGACATCGTGACCGTTCGATGCGGTCACTGCAGCAATCTCTGGTCTGTAAACATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCAAAGTGGCAGTTCAGCTGATTACAGGGTTGAATTAGGCTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATAATCAAAGGGTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCACTTTGGCCTCATGCTGGAAACCAACAATCTGAAGACTAAGAATGATGTGAGTTGA | 540 | 41.3 | MSSCNINSAQEKLCYIPCNFCNIVLAVSVPCNNLYDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSQSGSSADYRVELGSSSKCNNKMKMRAPIKNPTNDNQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLKTKNDVS | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1057656 | 1063462 | - | Sed0009177.3 | Sed11g0124 | 728770 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0124 | 179 | CDD | HMG-box_SF | 119 | 155 | - | - | |
Sed11g0124 | 179 | PANTHER | PROTEIN YABBY 6-RELATED | 9 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Sed11g0124 | 179 | FunFam | axial regulator YABBY 5-like | 103 | 161 | - | - | |
Sed11g0124 | 179 | SUPERFAMILY | HMG-box | 102 | 158 | IPR036910 | - | |
Sed11g0124 | 179 | Gene3D | High mobility group box domain | 110 | 161 | IPR036910 | - | |
Sed11g0124 | 179 | Pfam | YABBY protein | 9 | 165 | IPR006780 | GO:0007275(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3224 | Sed-Chr1:59497608 | Sed11g0124 | Sed-Chr11:1057656 | 1.80E-46 | dispersed | |
Sed08g0677 | Sed-Chr8:4823206 | Sed11g0124 | Sed-Chr11:1057656 | 2.00E-70 | dispersed | |
Sed10g1447 | Sed-Chr10:30726743 | Sed11g0124 | Sed-Chr11:1057656 | 1.20E-86 | dispersed | |
Sed11g0122 | Sed-Chr11:1057656 | Sed11g0124 | Sed-Chr11:1057656 | 7.10E-100 | dispersed | |
Sed11g0124 | Sed-Chr11:1057656 | Sed12g2369 | Sed-Chr12:33608023 | 3.60E-69 | dispersed | |
Sed11g0123 | Sed-Chr11:1057656 | Sed11g0124 | Sed-Chr11:1057656 | 3.10E-83 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39884 | PF04690 | YABBY | 3.20E-70 | CL0114 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0124 | K25796 | - | csv:101219877 | 316.235 |