Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0167 ATGACTGTGGAGGATCGAAAGGCTAATTTGGTGGGTGAAAATGGGGATATGGACCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCTATTTGCCTTCAGGTTTTGGAGAAGTTGCTTCGTAAATGTCAATATCATGTTACAACAACCAACCAGGCGGTTGAGGCTCTTAAATTATTGAGGGAGAACAGAAACACGTTTGATCTGGTTATCAGCGATGTGAACATGCCAGATATGGATGGTTTCAAGCTCCTTGAGCTAGTAGGGCTTGAAATGGACCTGCCTGTTATCATGCTGTCCGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATCGAGGAGCTGAAGAATATATGGCAACATGTACTTCGGAGAAAGAAGTCCTCTGCTAAGAACCAAAATAAGTGCACCGATGGAAATGATACTTGTAAAACTGTTGAAGTGGCAGAAGGTTTCCTGTCTGTGGTCAGTGCTGAAGACGGGAAACATGGTAAAAGACGAAAAGACCAGGACGACGATGAGGACGGAGGTGAAGACGAGAGTAGTTATGAGCATGATGACTCCACCCAAAAGAAGCAAAGGGTACTATGGGTTGGAGAGTTGCATAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAAGATCCTCGATCTGATGAATGTCGAAGGACTCACAAGAGAAAACGTCGCTAGCCATCTTCAGAAATATAGACAGTACCTTAAAAAAATGTGTACTGAGGAAGCTCAACAAAGTAACATGATGGCTGCATTTGGAGGTAAAGATAGCTCCTTCAAGCCCATGGATTCATTCGATGGATTTTCATTGACTGGAACAGGAAGGTTCTCGAATGCTACGTTTTCGTCGTACCCCTCTCGAGAAATTTTTGGTAGATTCAATTCTACTGCTGGATTAAGCTTACATGGAACAGCTTCCTCTGGAATGATCCAACAAGGTACTTCCCATAATTTGAGTAGGTCATTCAATACACTTGGGAAACCGCATCCAGCTTTCTTGCTTTCAAACCAACCGCCGACTTCATTGTCATCGGAATACAACCAGTTGTATCGGGACCGGGACAAACACACAGCGCCATTTAAAGAGTCTAACTTGATAAATGATGCCTCGAGTTTTACAGTTTTCACCAGTTTCCCTGATACTAAAGTGGCTGTCGGTAGCTCGAGCAATTATGACTTTGGTGTTTCAAGCCATCCACAGATGTTTCAAGGACATAAGCAACTGAATCATGGCAATGAAGAATTTGGAGATCAGTCTTTTCTTAAGGCATCTCCAGTCAAACCGCAAACCGTAGACCGCTGCACAGGTGTTTCTAATATTTTGAGCCATGGTCAGTCTAACAAAAACTGGCAAGGTGTCTCACTCACTGGAATTCACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGCTCAGCCCGATAACAACAACATTCCGATCGGTTTTCCTTCAACAAGTGTGGATTCGAGTTCTCAGCTGGATTTTAGAGGGGAGACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAACAGCTAAACAGGATTACTATGGCAACCATAGTTCTATATTGAGAAGCCCCCTTGTTTCTGGGAATAATGCTGCAGATCCCTTGAGCCAAAGTTCAGCAGATCAGAATAATGCAATCTGTTTCGATAACATCGGCAGCTCGTTGAATAATGGTGCTCCAACCTTCATTCAGCACGGTGTGGAAATGTCGACAATGGACGCGTGGATGAACTACGACGGAAAAGTTCTCATGGATCCAACAAAGCTACATAGAGGATTTTCAAATTCTAGTTTTAATTCCTTGGATGAATTAGTGAATTCTCTGTCGAAACAGGATCAAGATCAAACAATTCAAATAAACGACGAGTTTGGATTTGATGCTCAATCTCTTGGGTCATCGTGTATATGA 2049 42.8 MTVEDRKANLVGENGDMDQFPIGMRVLAVDDDPICLQVLEKLLRKCQYHVTTTNQAVEALKLLRENRNTFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKSSAKNQNKCTDGNDTCKTVEVAEGFLSVVSAEDGKHGKRRKDQDDDEDGGEDESSYEHDDSTQKKQRVLWVGELHRKFLAAVNHLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKMCTEEAQQSNMMAAFGGKDSSFKPMDSFDGFSLTGTGRFSNATFSSYPSREIFGRFNSTAGLSLHGTASSGMIQQGTSHNLSRSFNTLGKPHPAFLLSNQPPTSLSSEYNQLYRDRDKHTAPFKESNLINDASSFTVFTSFPDTKVAVGSSSNYDFGVSSHPQMFQGHKQLNHGNEEFGDQSFLKASPVKPQTVDRCTGVSNILSHGQSNKNWQGVSLTGIHPPDGMPAINLTISSAQPDNNNIPIGFPSTSVDSSSQLDFRGETQCYEELIGSVVEAMNGRSKQQWETAKQDYYGNHSSILRSPLVSGNNAADPLSQSSADQNNAICFDNIGSSLNNGAPTFIQHGVEMSTMDAWMNYDGKVLMDPTKLHRGFSNSSFNSLDELVNSLSKQDQDQTIQINDEFGFDAQSLGSSCI 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1498704 1504899 - Sed0023065.1 Sed11g0167 728813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0167 682 Pfam Myb-like DNA-binding domain 214 261 IPR001005 -
Sed11g0167 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 269 IPR045279 GO:0009736(InterPro)
Sed11g0167 682 SUPERFAMILY Homeodomain-like 206 267 IPR009057 -
Sed11g0167 682 CDD REC_typeB_ARR-like 26 140 - -
Sed11g0167 682 MobiDBLite consensus disorder prediction 177 206 - -
Sed11g0167 682 Gene3D - 205 268 - -
Sed11g0167 682 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Sed11g0167 682 FunFam Two-component response regulator 205 268 - -
Sed11g0167 682 Gene3D - 23 159 - -
Sed11g0167 682 PIRSF RR_ARR_type-B 1 682 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed11g0167 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Sed11g0167 682 SUPERFAMILY CheY-like 23 149 IPR011006 -
Sed11g0167 682 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Sed11g0167 682 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Sed11g0167 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0167 Sed-Chr11:1498704 Sed11g0169 Sed-Chr11:1498704 0.00E+00 dispersed
Sed11g0167 Sed-Chr11:1498704 Sed11g0168 Sed-Chr11:1498704 0.00E+00 tandem
Sed08g0478 Sed-Chr8:3038005 Sed11g0167 Sed-Chr11:1498704 9.60E-40 transposed
Sed08g0501 Sed-Chr8:3283007 Sed11g0167 Sed-Chr11:1498704 3.50E-27 transposed
Sed08g0511 Sed-Chr8:3346571 Sed11g0167 Sed-Chr11:1498704 2.50E-33 transposed
Sed10g1481 Sed-Chr10:31170713 Sed11g0167 Sed-Chr11:1498704 5.70E-08 wgd
Sed11g0167 Sed-Chr11:1498704 Sed12g2304 Sed-Chr12:33214239 3.70E-159 wgd
Sed11g0167 Sed-Chr11:1498704 Sed08g0600 Sed-Chr8:4143160 7.10E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39885 PF00072 Response_reg 2.50E-25 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0167 K14491 - csv:101203718 958.747