Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g0172 | ATGTCGGGCTGGGACGAAGGAGGAGTCTACTACAGCGACCAAGCGCAATCCCTTGGCGACGGAACCGGCATCGGCCGCAACGAAGATGCCGACGGAAAGGCCACTCACCACTCAGTTCTTCGCAAATTCAAGGAGTTCATCCGTGGATTTGAAGCCGACAAGAACGTTTTCCCCTACAGAGAGAGCCTTCTCCACAATCCGAAGTTCCTTCGCGTCGAAATGGAGGATGTTCACGCTTTCGACTCCGATCTCCCGGCTAAGCTCCGATCCGCCCCTGCCGATTTCTTGCCCTTGTTTGAAACCGCTGCGGCGGAGGTTTTAATGAATTTGAAGACGAAGGTGGCGGGTGAGACTGGAGAAATGGTGGATCCTGTGGCTGGAGATGTTCAAATTCTGCTAAACTCGAAGGAGGATCCAGTTTCCATGCGGTCGCTTGGGGCTCAATACATTTCTAAACTTATTAAGATATCTGGGATCACAATAGCTGCGTCAAGGACCAAGGCAAAGGCAACGTATGTGACCTTACTGTGTAAAAACTGTAGAAGTACACTAAGAGTTCCGTGTCGGCCTGGACTTGGCGGTGCAATTGTCCCTCGATCATGTAATCATATGCCACAGGCTGGAGAAGAACCATGCCCACTGGATCCTTGGCTTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACCTTAAAACTGCAGGAAAACCCAGAAGATGTTCCCACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGACATCTTGTTCAAACGATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTATCAGGCTGCCAATTCTGCTGCATCCCACAAAGGAGCAGTTGCAATTAGACAGCCTTATATTAGGGTTGTAGGAATTGAAGAATCTAATGAAGCTAACACTCGGGGCCCTGCATCTTTCACAGCAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCTCCCTCTATATTTGGTCATGATGATGTGAAGAAGGCAGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGAATTTGCCGGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCGTCTACAGCTAAATCTCAGTTTCTCAAGTTTGTTGAGAAGACTGCTCCTGTTGCTGTTTACACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATAAGAGATAACAGCTCTCGAGAGTTTTATCTTGAAGGGGGCGCAATGGTTTTAGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAAACAATATCCATAGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTGGCAGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAAGACGGCACAGGATAATATTGATCTGCAAACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATGTGAGGATGTACAGTCAAGACAAGATTATTGCAAGCCACATAATAAAAGTTCATGCATCTGCTGATTCAACCTTGGGTGAAAATAGGGTTTCCAAAGAAGAGAATTGGCTAAAGAGGTATATTCAATATTGTCGAACTCAATGCTATCCCCGTTTGTCAGAATCTGCATCCATAATGCTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAATCAGGGGAGGCTGCTGCGATTCCGATTACAGTAAGGCAGCTGGAAGCTGTCGTAAGGTTAAGCGAGTCACTTGCGAAAATGAAATTGTCCCATGTTGCCACGGAGGAAAATGTGCAGGAAGCTATTCGACTTTTTACCGTGTCCACAATGGATGCAGCACGCTCGGGGATTCATCAGCAAGTAAACCTAACACCTGAAATTGCTAATGAAATAAAGCAAGCAGAAACTCAGATAAAGAGAAGAATAGGAATCGGCAACCACATATCTGAGAGAAGGCTGATTGACGAGCTCACCAAAATGGGAATGAACGAGTCCATTGTGAGAAGAGCTCTGATTATTATGCACCAGAGAGACGAAGTGGAATACAAAAGAGAGAGACGTGTGATTTACCGCAAGGCATGA | 2208 | 44.88 | MSGWDEGGVYYSDQAQSLGDGTGIGRNEDADGKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKFLRVEMEDVHAFDSDLPAKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVDPVAGDVQILLNSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLLCKNCRSTLRVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWLVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSAASHKGAVAIRQPYIRVVGIEESNEANTRGPASFTAEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDNSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIASHIIKVHASADSTLGENRVSKEENWLKRYIQYCRTQCYPRLSESASIMLQNNYVKIRQDMRQQANESGEAAAIPITVRQLEAVVRLSESLAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEIANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRVIYRKA | 735 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1521362 | 1527160 | - | Sed0027129.1 | Sed11g0172 | 728818 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g0172 | 735 | ProSitePatterns | MCM family signature. | 442 | 450 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Sed11g0172 | 735 | SUPERFAMILY | Nucleic acid-binding proteins | 42 | 299 | IPR012340 | - | |
| Sed11g0172 | 735 | Pfam | MCM N-terminal domain | 41 | 114 | IPR027925 | - | |
| Sed11g0172 | 735 | Pfam | MCM AAA-lid domain | 561 | 650 | IPR041562 | - | |
| Sed11g0172 | 735 | CDD | MCM5 | 337 | 650 | - | - | |
| Sed11g0172 | 735 | FunFam | DNA helicase | 34 | 122 | - | - | |
| Sed11g0172 | 735 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 343 | 651 | IPR027417 | - | |
| Sed11g0172 | 735 | Gene3D | - | 32 | 122 | - | - | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 293 | 305 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 169 | 181 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 143 | 158 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 569 | 584 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 645 | 662 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed11g0172 | 735 | Gene3D | - | 169 | 227 | - | - | |
| Sed11g0172 | 735 | Gene3D | - | 314 | 669 | IPR027417 | - | |
| Sed11g0172 | 735 | FunFam | DNA helicase | 169 | 227 | - | - | |
| Sed11g0172 | 735 | FunFam | DNA helicase | 314 | 665 | - | - | |
| Sed11g0172 | 735 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 34 | 724 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| Sed11g0172 | 735 | Pfam | MCM5, C-terminal domain | 675 | 733 | IPR054125 | - | |
| Sed11g0172 | 735 | Gene3D | - | 142 | 277 | IPR012340 | - | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 486 | 498 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 434 | 448 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 374 | 389 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 462 | 475 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 513 | 521 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | SMART | mcm | 138 | 652 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | ProSiteProfiles | MCM family domain profile. | 333 | 539 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | Pfam | MCM P-loop domain | 320 | 543 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed11g0172 | 735 | Pfam | MCM OB domain | 142 | 277 | IPR033762 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g0763 | Sed-Chr6:8072988 | Sed11g0172 | Sed-Chr11:1521362 | 7.50E-64 | dispersed | |
| Sed06g0764 | Sed-Chr6:8072988 | Sed11g0172 | Sed-Chr11:1521362 | 6.80E-64 | dispersed | |
| Sed10g0145 | Sed-Chr10:920732 | Sed11g0172 | Sed-Chr11:1521362 | 8.10E-86 | dispersed | |
| Sed10g0146 | Sed-Chr10:920732 | Sed11g0172 | Sed-Chr11:1521362 | 6.00E-82 | dispersed | |
| Sed11g0172 | Sed-Chr11:1521362 | Sed14g1703 | Sed-Chr14:24882833 | 4.20E-84 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g0172 | K02209 | - | csv:101211822 | 1382.08 |