Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0178 | ATGTGTGTTACGGATTCAGAGCAGGTTGGTACTGAAAGGGCAGCAGAGTCTGGGAGTAATAACAGCAGGCCATGGCCTATGTATTGTGAAATTTTGGACAACACCCAGATGGGAAATCCTGATAAGGGTTCTGTTGTTTCTGGGAATTCTCTTCCTCTTGAAAGCATTACTGAGGATGCTGCAGTTGTTGATAGGAAAGAGAATCCATCTACTTTTGTTCCTGCACTTAGATCGGGAGAATGGTCTGATATCGGAAATCGTCCTTACATGGAGGACACTCATGTATGCATTCACGACATGGCTAAGAAGTTCGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGGGTATTTGATGGCCATGGAGGAAAAAGCGCTGCACAGTTTGTTCGAGACCACTTGCCGAGAGTCATCGTTGAAGATTCTGACTTCCCTTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGGTCTTGCACTCTTGAGACATCTCTATCTTCTGGCACAACTGCCCTTACTGCAATGATACTTGGAAGGTCCTTGCTTGTAGCAAATGCTGGCGACTGCCGAGCAGTATTATCAAGACGAGGCTGTGCAATAGAAATGTCAAAAGACCACAGGCCATGCTGCACAAAAGAACGAAAGCGAATCGAGGCATTGGGCGGATTCATTGATGACGATTATCTCAACGGCCTACTTGGGGTTACGCGCGCTATAGGAGACTGGCATCTTGAAGGAATGAAGGAATTGAGTGAAAAAGGTGGACCGTTAAGCGCAGAACCCGAACTTAGACTAATGACGTTGACAAAAGATGATGAGTTCTTGATCATAGGCAGTGATGGAATGTGGGATGCCTTCTCAAGCCAAAATGCTGTCGACTTCGCTCGGAGGAGGCTCCAAGAGCACAATGATATGAAAATTTGCTGCAAGGAAATGGTAGAAGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGCAGTGTTGGTTAGCTTTCACTTGGAGCCACCTCCACCAGTAATTTTTCTAAGGCCAAGATTTAGAAGAAGTATTTCAGCAGAGGGGCTTCAAAACCTCAAATTTCTGCTTGAAGGATAG | 1128 | 45.12 | MCVTDSEQVGTERAAESGSNNSRPWPMYCEILDNTQMGNPDKGSVVSGNSLPLESITEDAAVVDRKENPSTFVPALRSGEWSDIGNRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMILGRSLLVANAGDCRAVLSRRGCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKELSEKGGPLSAEPELRLMTLTKDDEFLIIGSDGMWDAFSSQNAVDFARRRLQEHNDMKICCKEMVEEAIKRGATDNLTAVLVSFHLEPPPPVIFLRPRFRRSISAEGLQNLKFLLEG | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1590520 | 1596853 | + | Sed0014283.1 | Sed11g0178 | 728824 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0178 | 375 | CDD | PP2Cc | 77 | 342 | IPR001932 | - | |
Sed11g0178 | 375 | Gene3D | - | 59 | 345 | IPR036457 | - | |
Sed11g0178 | 375 | Pfam | Protein phosphatase 2C | 86 | 334 | IPR001932 | - | |
Sed11g0178 | 375 | PANTHER | PROTEIN PHOSPHATASE 2C | 75 | 342 | IPR015655 | GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro) | |
Sed11g0178 | 375 | FunFam | Probable protein phosphatase 2C 22 | 61 | 345 | - | - | |
Sed11g0178 | 375 | SMART | PP2C_4 | 67 | 340 | IPR001932 | - | |
Sed11g0178 | 375 | ProSiteProfiles | PPM-type phosphatase domain profile. | 77 | 342 | IPR001932 | - | |
Sed11g0178 | 375 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sed11g0178 | 375 | ProSitePatterns | PPM-type phosphatase domain signature. | 116 | 124 | IPR000222 | GO:0043169(InterPro) | |
Sed11g0178 | 375 | SUPERFAMILY | PP2C-like | 66 | 343 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1555 | Sed-Chr8:30623432 | Sed11g0178 | Sed-Chr11:1590520 | 1.70E-153 | dispersed | |
Sed11g0178 | Sed-Chr11:1590520 | Sed13g2205 | Sed-Chr13:26558900 | 4.70E-87 | dispersed | |
Sed07g0730 | Sed-Chr7:5471313 | Sed11g0178 | Sed-Chr11:1590520 | 2.20E-33 | transposed | |
Sed11g0178 | Sed-Chr11:1590520 | Sed08g1554 | Sed-Chr8:30623432 | 1.50E-189 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39889 | PF00481 | PP2C | 9.80E-66 | CL0238 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0178 | K14803 | - | csv:101210349 | 664.07 |