Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0178 ATGTGTGTTACGGATTCAGAGCAGGTTGGTACTGAAAGGGCAGCAGAGTCTGGGAGTAATAACAGCAGGCCATGGCCTATGTATTGTGAAATTTTGGACAACACCCAGATGGGAAATCCTGATAAGGGTTCTGTTGTTTCTGGGAATTCTCTTCCTCTTGAAAGCATTACTGAGGATGCTGCAGTTGTTGATAGGAAAGAGAATCCATCTACTTTTGTTCCTGCACTTAGATCGGGAGAATGGTCTGATATCGGAAATCGTCCTTACATGGAGGACACTCATGTATGCATTCACGACATGGCTAAGAAGTTCGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGGGTATTTGATGGCCATGGAGGAAAAAGCGCTGCACAGTTTGTTCGAGACCACTTGCCGAGAGTCATCGTTGAAGATTCTGACTTCCCTTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGGTCTTGCACTCTTGAGACATCTCTATCTTCTGGCACAACTGCCCTTACTGCAATGATACTTGGAAGGTCCTTGCTTGTAGCAAATGCTGGCGACTGCCGAGCAGTATTATCAAGACGAGGCTGTGCAATAGAAATGTCAAAAGACCACAGGCCATGCTGCACAAAAGAACGAAAGCGAATCGAGGCATTGGGCGGATTCATTGATGACGATTATCTCAACGGCCTACTTGGGGTTACGCGCGCTATAGGAGACTGGCATCTTGAAGGAATGAAGGAATTGAGTGAAAAAGGTGGACCGTTAAGCGCAGAACCCGAACTTAGACTAATGACGTTGACAAAAGATGATGAGTTCTTGATCATAGGCAGTGATGGAATGTGGGATGCCTTCTCAAGCCAAAATGCTGTCGACTTCGCTCGGAGGAGGCTCCAAGAGCACAATGATATGAAAATTTGCTGCAAGGAAATGGTAGAAGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGCAGTGTTGGTTAGCTTTCACTTGGAGCCACCTCCACCAGTAATTTTTCTAAGGCCAAGATTTAGAAGAAGTATTTCAGCAGAGGGGCTTCAAAACCTCAAATTTCTGCTTGAAGGATAG 1128 45.12 MCVTDSEQVGTERAAESGSNNSRPWPMYCEILDNTQMGNPDKGSVVSGNSLPLESITEDAAVVDRKENPSTFVPALRSGEWSDIGNRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMILGRSLLVANAGDCRAVLSRRGCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKELSEKGGPLSAEPELRLMTLTKDDEFLIIGSDGMWDAFSSQNAVDFARRRLQEHNDMKICCKEMVEEAIKRGATDNLTAVLVSFHLEPPPPVIFLRPRFRRSISAEGLQNLKFLLEG 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1590520 1596853 + Sed0014283.1 Sed11g0178 728824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0178 375 CDD PP2Cc 77 342 IPR001932 -
Sed11g0178 375 Gene3D - 59 345 IPR036457 -
Sed11g0178 375 Pfam Protein phosphatase 2C 86 334 IPR001932 -
Sed11g0178 375 PANTHER PROTEIN PHOSPHATASE 2C 75 342 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed11g0178 375 FunFam Probable protein phosphatase 2C 22 61 345 - -
Sed11g0178 375 SMART PP2C_4 67 340 IPR001932 -
Sed11g0178 375 ProSiteProfiles PPM-type phosphatase domain profile. 77 342 IPR001932 -
Sed11g0178 375 MobiDBLite consensus disorder prediction 1 22 - -
Sed11g0178 375 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169(InterPro)
Sed11g0178 375 SUPERFAMILY PP2C-like 66 343 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1555 Sed-Chr8:30623432 Sed11g0178 Sed-Chr11:1590520 1.70E-153 dispersed
Sed11g0178 Sed-Chr11:1590520 Sed13g2205 Sed-Chr13:26558900 4.70E-87 dispersed
Sed07g0730 Sed-Chr7:5471313 Sed11g0178 Sed-Chr11:1590520 2.20E-33 transposed
Sed11g0178 Sed-Chr11:1590520 Sed08g1554 Sed-Chr8:30623432 1.50E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39889 PF00481 PP2C 9.80E-66 CL0238 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0178 K14803 - csv:101210349 664.07