Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0187 ATGGAAGTAGCCAAAACTGCACAAAAATCATGGGCTAAGACCCCATTGTGGAAGAGAGCTGAGCTTCTTCACAAGGCTGCTGCTATTTTGAAAGAACACAAAGCTCCAATTGCTGAGTGTTTGGTGAAGGAGATTGCTAAACCAGCCAAAGATGCTGTGACTGAGGTTGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGATAGTTTTCCTGGAAATGAGAGGACCAAATATTGCCTTTCTTCCAAGATCCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTTTCGAAAATCGCCCCGGCTTTGATTGCCGGAAACTCCATCGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTGAAGGTCTTATTAGTTGTGTCACAGGAAAAGGTTCCGAGATCGGCGATTTCCTCACGATGCATCCGGGTGTCGACTGTATAAGCTTTACAGGTGGAGATACCGGCATTGCAATTTCAAAGAAGGCAGGGATGGTACCTCTTCAGATGGAACTCGGAGGGAAAGACGCCTGCATTGTTATCGAGGACGCAGATCTCGATCTAGTTGCCGCTAACATCATCAAAGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCTGTCAAGGTTGTTTTAGTAATGGACTCCGTCGCAGATGATTTGGTCGAGAAAGTAAATGCCCGAGCGGCTAAATTAACTGTCGGTTCCCCCGAAGACGACTCAGACATTACTCCCGTTGTGACCGAGTCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACTTAATATGGCCATTATTGTTAGATAATGTTAGGCCTGACATGAGGATTGCATGGGAGGAACCTTTTGGACCAATTTTGCCACTCATAAGAATCAGCTCAATTGAAGAAGGAATCCACCATTGCAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACATTAACAAGGCGATATTGATAATCGACGCAATGGAAACCGGGACAGTTCAAATCAACTCGGAGCCTGCTCGAGGACCTGACCATTTCCCATTCCAGGGGATCAAGGACAGTGGAATTGGTTCTCAAGGAGTCACCAACAGCATCAACATGATGACAAAAGTGAAGACCACAGTTATTAACTTGCCTACACCTTCCTACACCATGGGTTAG 1317 46.24 MEVAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLSSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPEGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMVPLQMELGGKDACIVIEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMDSVADDLVEKVNARAAKLTVGSPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPILPLIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILIIDAMETGTVQINSEPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1703788 1707104 + Sed0021265.1 Sed11g0187 728833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0187 438 Pfam Aldehyde dehydrogenase family 2 425 IPR015590 GO:0016491(InterPro)
Sed11g0187 438 SUPERFAMILY ALDH-like 2 429 IPR016161 GO:0016491(InterPro)
Sed11g0187 438 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 209 399 - -
Sed11g0187 438 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1 224 - -
Sed11g0187 438 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 205 212 IPR029510 GO:0016491(InterPro)
Sed11g0187 438 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 210 399 IPR016163 GO:0016620(InterPro)
Sed11g0187 438 CDD ALDH_F11_NP-GAPDH 1 429 - -
Sed11g0187 438 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 207 IPR016162 GO:0016491(InterPro)
Sed11g0187 438 PANTHER ALDEHYDE DEHYDROGENASE 1 437 IPR051020 GO:0008911(PANTHER)
Sed11g0187 438 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 233 244 IPR016160 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1569 Sed-Chr8:30751254 Sed11g0187 Sed-Chr11:1703788 1.30E-246 dispersed
Sed11g0187 Sed-Chr11:1703788 Sed08g1568 Sed-Chr8:30751095 3.00E-247 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0187 K00131 - csv:101208699 845.884