Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0193 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCACCACCACCACCAAACTCCGACCACCACCGCATCTCCGCCCAATGGCCTCCTTCCCCCCACCCACCACCACCACGACGCCGCCGCCGCCGCCGCTGCCGTCGTTTACCCTCACTCCGCCCCCTCCGCCGCCTCCCCTCTCGAGCCCCCTCGCCGGAAAAGAGGCCGCCCGAGGAAGTACGGCACGCCGGAGGAAGCTCTGGCGGCGAAGAAAGCTGCGACGGCGTCTTCTCACTCCTCCGCCTCCAAGGCCAAGAAGGACCTTCTCGCTTCTTCCGCTTCTGTTAATCCCATTTCCGCTTCTTCCAAGAAATCTCAATTGGCTTCACATGGTAATGCAGGCCAAGGTTTTGCACCACATGTTATTAATGTGGCAACTGGCGAGGACGTGGGCCAGAAAATTATGCTGTTTATGCAACAATGTAAGCGGGAAATCTGCATCCTTTCTGCATCTGGTTCGATCTCCAGTGCATCTCTCCGTCAGCCAGCCACATCCGGAGGCAATATTGCATATGAGGGTCGGTTTGATATAGTTTCGTTATGCGGATCTTATGTACGAACCGGGATTGGAGGAAAGACTGGTGGTCTTAGTGTATGTTTGTCAAGTTCTGATGGCCATATCATAGGAGGGGGAGTTGGTGGAACGTTGAAAGCTGCTGGACCCGTACAGGTTATTGTTGGCACTTTTGTAATGGACCCGAAGAAGGAAGCTGGCGGAGGTACTAAAGGCGATGCGTCTGCTGGCAAGTATCCGTCACCTATTGGTGGGACATCAATGTCAAATCTACGCTATGGCTCGAACATCGACTCGGGAGGTAATGAAGTCAGAGGAAATGATGAGCACCGAGGTATTGGGGAGAATCACTTCTTGCTTCAGCCTCGGGGGGTGAATCTGATGTCTCCACGATCTTCGGATTGGAGGACGGGTCTGGATGCCACAAACACTGCATATGATTTGACAGGAAGAACAGGCCATCATTCTCCCGAAAACGGAGATTACGACCAGATTCCCGATTGA 1059 53.73 MEPNENQLSSYFHHHHHHQTPTTTASPPNGLLPPTHHHHDAAAAAAAVVYPHSAPSAASPLEPPRRKRGRPRKYGTPEEALAAKKAATASSHSSASKAKKDLLASSASVNPISASSKKSQLASHGNAGQGFAPHVINVATGEDVGQKIMLFMQQCKREICILSASGSISSASLRQPATSGGNIAYEGRFDIVSLCGSYVRTGIGGKTGGLSVCLSSSDGHIIGGGVGGTLKAAGPVQVIVGTFVMDPKKEAGGGTKGDASAGKYPSPIGGTSMSNLRYGSNIDSGGNEVRGNDEHRGIGENHFLLQPRGVNLMSPRSSDWRTGLDATNTAYDLTGRTGHHSPENGDYDQIPD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1761133 1767879 + Sed0011974.1 Sed11g0193 728839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0193 352 ProSiteProfiles PPC domain profile profile. 127 269 IPR005175 -
Sed11g0193 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 260 IPR039605 GO:0003680(InterPro)
Sed11g0193 352 MobiDBLite consensus disorder prediction 331 352 - -
Sed11g0193 352 MobiDBLite consensus disorder prediction 1 96 - -
Sed11g0193 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 243 IPR005175 -
Sed11g0193 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 244 - -
Sed11g0193 352 CDD DUF296 133 243 IPR005175 -
Sed11g0193 352 Gene3D - 133 254 - -
Sed11g0193 352 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0193 Sed-Chr11:1761133 Sed13g1199 Sed-Chr13:17102459 4.60E-36 dispersed
Sed11g0193 Sed-Chr11:1761133 Sed11g0198 Sed-Chr11:1793311 2.50E-18 proximal
Sed11g0193 Sed-Chr11:1761133 Sed08g1582 Sed-Chr8:30909944 2.40E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0193 - - - 0.0