Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0198 ATGGCGAACCGGTGGTGGACCTCGAGCCAGATGGGTCTTCCCGAAGTTGATCATACATCTATAAGCTCCTCTTCCATGAGAAAACCAGATCTGGGGATCTCCATGAATGACAACAGCGGCCCCGTTAGCAGCGGTGGTGGCGACGACGATGACGACCGGGATAACACTGGGGATGAGCCTAAAGAAGGAGCGGTTGACGCTCCAACACGCCGGCCTCGTGGTCGACCGGCTGGCTCAAAGAACAAGCCTAAGCCTCCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAGAGCCATGTCATGGAGATTTCTAGTGGAGCTGATATTGTTGAGAGTGTGGCTCAATTCGCCAGACGACGACAAAAAGGCGTTTCTATACTTAGTGGAAATGGCTCGGTAACGAATGTGACGCTTCGACAACCGTCTGCTCCCGGTGCAGTCTTGACCCTCCAAGGCCGATTCGAGATTCTTTCTTTGACAGGTAGTTTCCTCCCTGGACCATCCCCACCTGGCTCTACGGGACTAACAATCTACTTAGCCGGCGGTCAAGGGCAAGTGGTGGGAGGCAGCGTTGTTGGTCCACTAACCGCTGCTGGCCCGGTGATGGTGATCTCAGCAACGTTTTCAAATGCGACATATGAACGATTACCCTTAGAAGAAGAGGAAGAAGGAAGCGGAGGAGCACAAGGGCACGCACCAGCCGGTGGAGGTGCAGGAGACGGTTCGCCACACGGCATCGGTGGTGGAGTTGGAGATCCATCAACGATGCCGCCGCTGTACAACTTACCGTTGAACGGCGGCGGAGGGCAGATGAACCAAGACGCTTATTCTTGGGTTCATGATGGGAGGACATCCTTCTAG 864 54.17 MANRWWTSSQMGLPEVDHTSISSSSMRKPDLGISMNDNSGPVSSGGGDDDDDRDNTGDEPKEGAVDAPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEISSGADIVESVAQFARRRQKGVSILSGNGSVTNVTLRQPSAPGAVLTLQGRFEILSLTGSFLPGPSPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVISATFSNATYERLPLEEEEEGSGGAQGHAPAGGGAGDGSPHGIGGGVGDPSTMPPLYNLPLNGGGGQMNQDAYSWVHDGRTSF 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1793311 1794712 - Sed0023879.1 Sed11g0198 728844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0198 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Sed11g0198 287 CDD DUF296 98 181 IPR005175 -
Sed11g0198 287 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Sed11g0198 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 284 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed11g0198 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 210 IPR005175 -
Sed11g0198 287 MobiDBLite consensus disorder prediction 1 43 - -
Sed11g0198 287 MobiDBLite consensus disorder prediction 219 267 - -
Sed11g0198 287 Gene3D - 98 224 - -
Sed11g0198 287 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Sed11g0198 287 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1584 Sed-Chr8:30942651 Sed11g0198 Sed-Chr11:1793311 5.60E-117 dispersed
Sed11g0198 Sed-Chr11:1793311 Sed12g1013 Sed-Chr12:6513577 2.00E-77 dispersed
Sed11g0193 Sed-Chr11:1761133 Sed11g0198 Sed-Chr11:1793311 2.50E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0198 - - - 0.0