Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g0201 | ATGAAAAATAACATAATTTCAGGTACTCCAGTTAACATTATTGTCGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGACAGGTTTCCAAGATTACAGGGCAGGAAGCTGAGATCGATGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATATCCAAAAGATATGGAAGCTCCAGCTGGTGGTGTTGATGACATGACAAAGCTATCTTACTTGCACGAGCCTGGAGTTCTACAAAATTTAAAAGCTCGATATGAACTCAATGAAATCTATACATACACTGGCAATATTCTTATTGCTATTAATCCATTCCAAAGATTGCCCCATATTTATGATGGCCACATGATGCAACAATACAAAGGAGCACCATTTGGAGAACTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATTAATGAGGGTAAAAGCAATTCTATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAGATGCTTATGCGGTACCTTGCATTTTTAGGTGGTCGAGCGGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACCGTTAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCCGAACTTATCTTCTTGAGAGATCTCGAGTCTGCCAAGTTTCTGATCCCGAGCGCAATTATCACTGCTTTTACCTTCTTTGTGCTGCACCTCATGAGGAAATTGAAAAATACAAGCTGGGAAATCCGAGATCATTTCATTATCTCAATCAATCAAGTTGCTATGAACTGGGTGATGTAAGTGATGCTCGTGAGTATCTTGCCACAAGAAGAGCCATGGATATTGTTGGAATAAGTGCTAAAGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTTGGCAACATTGCATTTTCCAAGGGCAAAGACGCTGATTCATCAAATCCAAAAGATGACCAGGCCAAGTTTCATCTTAAAATGACTGCAGAGCTTCTCATGTGTGATCAAGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGGTCACGCCGGAAGAAGTGATCAAACGTAGTTTGGATCCTCAAAGTGCGGCTATTAGTCGTGACGGTTTGGCCAAAACTATATATTCTCGACTATTTGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGACCCTAATTCCAAGTCCTTGATTGGGGTTCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAATAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGCTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACAAAAGAAGAGATTAATTGGAGTTACATCGAGTTTGTCGACAATCAAGATGTGTTGGATCTCATTGAAAAGAAACCTGGTGGAATCGTAGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACTCATGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAGTACATAAGCGGTTTATAAAGCCAAAACTTTCTCGAACGGATTTTACCATTGCTCATTATGCTGGAGAGGTTTTGTATCAATCTGATCAGTTTTTGGACAAAAACAAGGATTATGTCGTTCCTGAATATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTTGCTGGTCTTTTCCCCCCACTAAAAGAAGAATCTTCAAAATCTTCCAAGTTTTCTTCAATCGGGTCTCGTTTTAAGCTACAACTACAATCGTTAATGGACACATTAAATTCCACAGAACCTCACTACATCAGATGTGTAAAACCAAACAACCTCTTAAAACCAGCCATCTTCGAGAACGTCAACATAATGCAACAACTGCGTTGTGGTGGTGTCTTGGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGCGCGTTCTTTGAATTCATTAACCGATTTGGAATTTTAGCTCAAGAATCTTTGGAAGTAAACTATGATGAAAAAAGTGTGTGCAAAAAGATACTAGAAAAGCAGGGACTTAACGGATTTCAGATAGGTAAAACCAAAGTATTCCTAAGGGCTGGTCAGATGGCCGAATTAGATGCTCGGAGAGCAGAGGTGTTGAGCAGTGCAGCGAAGACTATTCAACGGCGCACACGAACCCACATTGCTCGTAAACACTTTATTGCATTACGAAAGGCAACCATCCGTATACAATCTAGGTGGAGAGGAAAACTAGCTTGCAAACAATTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGGAGATTTCATGCGAGAAAAGACTATAAAAGACTACAAAGCTCAGTGCTTACTGTGCAAACTGGTTTAAGGGCAATGGCAGCTAGGAACAAATTCAGATTTATGAAGCAGACAAAAGCAGCAATTATTATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCATACTATACGAAACTTAAACGAGGCGCGGTAGTTGCACAGTGTAGATGGAGGGGAAAAGTTGGAAGGAAAGAACTTAGAAAACTCAAAATGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAAGAACTTACTTGGCGCATACAATTAGAGAAACGTCTAAGGACGGATTTGGAAGAGGCAAAAGCACAGGAGACAGCAAAATATCAAAATTCTGTGCAAGAACTGCAGGCAAAACTCGATGAAACAAACGTGTTGCTTGTAAAGGAGCGAGAAGCTGTGAAGGCTGTTGAAGAAGCACCTCCTGTCGTACAAGAAACCCAAGTTTTGGTTGAAGATACCAAGAAACTTGAGGCTTTGACAGAAGAAATAGATAGCTTAAAGACCTCACTGGAGACAGAGAAAAACAGAGCGGATGAATATGAGAAAAAATATAGTGAAGTAGAACAGTCTAGAGAAGAACAACGAAAAAAGTTAGAAGATACAGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTCGGAATCAGAGAATCAAGTTTTGCGCCAACAAGCTGTGTCTATGGCATCTATGGCACCTAATAAAGTCCTCTCTGGACGGTCTAGATCAATTCTTCAGAGAGGTGCTGATAGTGGTCATTATGGAGGGGAAGGAAGGACACCTTTGGATTTACACAGCTCTTCTATGGTTAATAGGGATTCAGAAGTTGAGGATAAACCTCAAAAATCACTTAATGAGAAACAGCAAGAAAATCAAGAATTGCTCATTAGGTGTATTGCACAGCACCTTGGCTTTGCATCAAACAGGCCAATTGCTGCTTGTATCATCTACAAGTGCTTGCTTCAATGGAGATCATTCGAAGTCGAACGCACCAGTGTCTTCGATAGGATAATTCAAACTATAGGCCATGCAATTGAGACTCAAGACAACAATGATGTCCTGGCCTATTGGTTATCCAATGCTTCGACACTTCTTTTACTACTTCAGCGCACTCTGAAAGCAAGTGGCGCTGCTGGAATGGCTCCACAACGTCGGCGATCATCGTCAGCTACACTATTTGGGAGGATGACTCAAAGTTTTAGAGGAGCTCCACAAGGAGTCAACCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACACTTTAAGGCAAGTTGAAGCAAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCCCCAAGAACATCAAGGGCAAGTTTGGTGAAGGGATCTTCTCGTTCAGTTGCCACCACGGAGGCCCAGCGCGCCTTAATTGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGAAACTTCTTGAACACCTTAAAAGCAAATAATGTGCCCCCATTTTTGGTTCGTAAGGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTACTACGACGAGAGTGTTGTTCGTTTAGCAATGGCGAATACGTCAAAGCTGGGCTGTCGGAATTAGAGGATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGATGAGCTTAAGCATATAAGACAAGCCATTGGTTTTCTGGTCATTCATCAGAAGCCAAAAAAGACGCTAGACGAAATAAGTCACGATCTATGCCCAGTACTAAGTATACAGCAGCTATATCGTATCAGTACGATGTACTGGGACGACAAGTACGGCACTCATAGTGTTTCCCCTGATGTTATATCCAATATGAGAGTGTTAATGACCGAAGATTCAAACCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCGAGCATTCCATTCTCAGTTGATGATATATCAAAGTCTATGAATCAAATAGACATAGGAGACATCGAACCGCCGCCACTAATACGGGAGAACTCGGGCTTCAGTTTCTTGTTACCACGAACAGACTAA | 4614 | 41.18 | MKNNIISGTPVNIIVGSHVWIEDPEVAWLDGQVSKITGQEAEIDASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYDGHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPHEEIEKYKLGNPRSFHYLNQSSCYELGDVSDAREYLATRRAMDIVGISAKEQEAIFRVVAAILHLGNIAFSKGKDADSSNPKDDQAKFHLKMTAELLMCDQAGLEDALCKRVMVTPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKVHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEYQDLLGASKCSFVAGLFPPLKEESSKSSKFSSIGSRFKLQLQSLMDTLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEVNYDEKSVCKKILEKQGLNGFQIGKTKVFLRAGQMAELDARRAEVLSSAAKTIQRRTRTHIARKHFIALRKATIRIQSRWRGKLACKQFKNLKREAAAVKIQKNARRFHARKDYKRLQSSVLTVQTGLRAMAARNKFRFMKQTKAAIIIQARWRCHKAASYYTKLKRGAVVAQCRWRGKVGRKELRKLKMAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQETAKYQNSVQELQAKLDETNVLLVKEREAVKAVEEAPPVVQETQVLVEDTKKLEALTEEIDSLKTSLETEKNRADEYEKKYSEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNSESENQVLRQQAVSMASMAPNKVLSGRSRSILQRGADSGHYGGEGRTPLDLHSSSMVNRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFASNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANNVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEDWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDISKSMNQIDIGDIEPPPLIRENSGFSFLLPRTD | 1537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1805906 | 1820808 | + | Sed0001866.1 | Sed11g0201 | 728847 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g0201 | 1537 | FunFam | Class V myosin | 445 | 580 | - | - | |
| Sed11g0201 | 1537 | ProSiteProfiles | Myosin motor domain profile. | 68 | 738 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | ProSiteProfiles | Dilute domain profile. | 1167 | 1480 | IPR002710 | - | |
| Sed11g0201 | 1537 | SMART | MYSc_2a | 63 | 739 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | PANTHER | MYOSIN | 838 | 1479 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed11g0201 | 1537 | FunFam | Myosin heavy chain | 258 | 313 | - | - | |
| Sed11g0201 | 1537 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 45 | 791 | IPR027417 | - | |
| Sed11g0201 | 1537 | Pfam | IQ calmodulin-binding motif | 743 | 761 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | Pfam | IQ calmodulin-binding motif | 838 | 857 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | Pfam | IQ calmodulin-binding motif | 791 | 810 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | Pfam | IQ calmodulin-binding motif | 765 | 785 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | Pfam | Myosin N-terminal SH3-like domain | 15 | 58 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | Coils | Coil | 883 | 917 | - | - | |
| Sed11g0201 | 1537 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 318 | 607 | - | - | |
| Sed11g0201 | 1537 | Pfam | DIL domain | 1356 | 1459 | IPR002710 | - | |
| Sed11g0201 | 1537 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 791 | 889 | IPR027417 | - | |
| Sed11g0201 | 1537 | MobiDBLite | consensus disorder prediction | 994 | 1034 | - | - | |
| Sed11g0201 | 1537 | ProSiteProfiles | IQ motif profile. | 789 | 818 | - | - | |
| Sed11g0201 | 1537 | FunFam | unconventional myosin-Va | 792 | 839 | - | - | |
| Sed11g0201 | 1537 | Coils | Coil | 936 | 956 | - | - | |
| Sed11g0201 | 1537 | CDD | MyosinXI_CBD | 1118 | 1503 | IPR037975 | GO:0007015(InterPro) | |
| Sed11g0201 | 1537 | ProSiteProfiles | IQ motif profile. | 837 | 863 | - | - | |
| Sed11g0201 | 1537 | FunFam | unconventional myosin-Va | 743 | 791 | - | - | |
| Sed11g0201 | 1537 | FunFam | unconventional myosin-Va | 840 | 887 | - | - | |
| Sed11g0201 | 1537 | Gene3D | - | 673 | 736 | - | - | |
| Sed11g0201 | 1537 | Gene3D | Kinesin motor domain | 71 | 668 | IPR036961 | - | |
| Sed11g0201 | 1537 | ProSiteProfiles | IQ motif profile. | 812 | 841 | - | - | |
| Sed11g0201 | 1537 | Coils | Coil | 973 | 1056 | - | - | |
| Sed11g0201 | 1537 | SMART | iq_5 | 740 | 762 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | SMART | iq_5 | 836 | 858 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | SMART | iq_5 | 763 | 785 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | SMART | iq_5 | 859 | 881 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | SMART | iq_5 | 788 | 810 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | SMART | iq_5 | 811 | 833 | IPR000048 | GO:0005515(InterPro) | |
| Sed11g0201 | 1537 | PRINTS | Myosin heavy chain signature | 155 | 180 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | PRINTS | Myosin heavy chain signature | 488 | 516 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | PRINTS | Myosin heavy chain signature | 98 | 117 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | PRINTS | Myosin heavy chain signature | 202 | 229 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | PRINTS | Myosin heavy chain signature | 435 | 463 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | Gene3D | - | 791 | 838 | - | - | |
| Sed11g0201 | 1537 | Gene3D | - | 739 | 790 | - | - | |
| Sed11g0201 | 1537 | Gene3D | - | 839 | 888 | - | - | |
| Sed11g0201 | 1537 | Gene3D | - | 258 | 316 | - | - | |
| Sed11g0201 | 1537 | SMART | DIL_2 | 1355 | 1462 | IPR002710 | - | |
| Sed11g0201 | 1537 | Gene3D | - | 445 | 629 | - | - | |
| Sed11g0201 | 1537 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 14 | 63 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | CDD | MYSc_Myo11 | 82 | 726 | IPR036018 | - | |
| Sed11g0201 | 1537 | ProSiteProfiles | IQ motif profile. | 764 | 793 | - | - | |
| Sed11g0201 | 1537 | Pfam | Myosin head (motor domain) | 70 | 726 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed11g0201 | 1537 | ProSiteProfiles | IQ motif profile. | 741 | 768 | - | - | |
| Sed11g0201 | 1537 | ProSiteProfiles | IQ motif profile. | 860 | 889 | - | - | |
| Sed11g0201 | 1537 | MobiDBLite | consensus disorder prediction | 1078 | 1119 | - | - | |
| Sed11g0201 | 1537 | FunFam | Myosin 2 | 318 | 433 | - | - | |
| Sed11g0201 | 1537 | MobiDBLite | consensus disorder prediction | 1102 | 1118 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0895 | Sed-Chr8:7500253 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed08g1805 | Sed-Chr8:32762590 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed09g1034 | Sed-Chr9:33741678 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed09g1420 | Sed-Chr9:38078234 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed09g1421 | Sed-Chr9:38079153 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed11g0201 | Sed-Chr11:1805906 | Sed12g0428 | Sed-Chr12:2572455 | 0.00E+00 | dispersed | |
| Sed11g0201 | Sed-Chr11:1805906 | Sed08g1586 | Sed-Chr8:30963986 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g0201 | K10357 | - | csv:101206606 | 2791.14 |