Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0201 ATGAAAAATAACATAATTTCAGGTACTCCAGTTAACATTATTGTCGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGACAGGTTTCCAAGATTACAGGGCAGGAAGCTGAGATCGATGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATATCCAAAAGATATGGAAGCTCCAGCTGGTGGTGTTGATGACATGACAAAGCTATCTTACTTGCACGAGCCTGGAGTTCTACAAAATTTAAAAGCTCGATATGAACTCAATGAAATCTATACATACACTGGCAATATTCTTATTGCTATTAATCCATTCCAAAGATTGCCCCATATTTATGATGGCCACATGATGCAACAATACAAAGGAGCACCATTTGGAGAACTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATTAATGAGGGTAAAAGCAATTCTATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAGATGCTTATGCGGTACCTTGCATTTTTAGGTGGTCGAGCGGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACCGTTAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCCGAACTTATCTTCTTGAGAGATCTCGAGTCTGCCAAGTTTCTGATCCCGAGCGCAATTATCACTGCTTTTACCTTCTTTGTGCTGCACCTCATGAGGAAATTGAAAAATACAAGCTGGGAAATCCGAGATCATTTCATTATCTCAATCAATCAAGTTGCTATGAACTGGGTGATGTAAGTGATGCTCGTGAGTATCTTGCCACAAGAAGAGCCATGGATATTGTTGGAATAAGTGCTAAAGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTTGGCAACATTGCATTTTCCAAGGGCAAAGACGCTGATTCATCAAATCCAAAAGATGACCAGGCCAAGTTTCATCTTAAAATGACTGCAGAGCTTCTCATGTGTGATCAAGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGGTCACGCCGGAAGAAGTGATCAAACGTAGTTTGGATCCTCAAAGTGCGGCTATTAGTCGTGACGGTTTGGCCAAAACTATATATTCTCGACTATTTGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGACCCTAATTCCAAGTCCTTGATTGGGGTTCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAATAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGCTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACAAAAGAAGAGATTAATTGGAGTTACATCGAGTTTGTCGACAATCAAGATGTGTTGGATCTCATTGAAAAGAAACCTGGTGGAATCGTAGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACTCATGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAGTACATAAGCGGTTTATAAAGCCAAAACTTTCTCGAACGGATTTTACCATTGCTCATTATGCTGGAGAGGTTTTGTATCAATCTGATCAGTTTTTGGACAAAAACAAGGATTATGTCGTTCCTGAATATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTTGCTGGTCTTTTCCCCCCACTAAAAGAAGAATCTTCAAAATCTTCCAAGTTTTCTTCAATCGGGTCTCGTTTTAAGCTACAACTACAATCGTTAATGGACACATTAAATTCCACAGAACCTCACTACATCAGATGTGTAAAACCAAACAACCTCTTAAAACCAGCCATCTTCGAGAACGTCAACATAATGCAACAACTGCGTTGTGGTGGTGTCTTGGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGCGCGTTCTTTGAATTCATTAACCGATTTGGAATTTTAGCTCAAGAATCTTTGGAAGTAAACTATGATGAAAAAAGTGTGTGCAAAAAGATACTAGAAAAGCAGGGACTTAACGGATTTCAGATAGGTAAAACCAAAGTATTCCTAAGGGCTGGTCAGATGGCCGAATTAGATGCTCGGAGAGCAGAGGTGTTGAGCAGTGCAGCGAAGACTATTCAACGGCGCACACGAACCCACATTGCTCGTAAACACTTTATTGCATTACGAAAGGCAACCATCCGTATACAATCTAGGTGGAGAGGAAAACTAGCTTGCAAACAATTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGGAGATTTCATGCGAGAAAAGACTATAAAAGACTACAAAGCTCAGTGCTTACTGTGCAAACTGGTTTAAGGGCAATGGCAGCTAGGAACAAATTCAGATTTATGAAGCAGACAAAAGCAGCAATTATTATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCATACTATACGAAACTTAAACGAGGCGCGGTAGTTGCACAGTGTAGATGGAGGGGAAAAGTTGGAAGGAAAGAACTTAGAAAACTCAAAATGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAAGAACTTACTTGGCGCATACAATTAGAGAAACGTCTAAGGACGGATTTGGAAGAGGCAAAAGCACAGGAGACAGCAAAATATCAAAATTCTGTGCAAGAACTGCAGGCAAAACTCGATGAAACAAACGTGTTGCTTGTAAAGGAGCGAGAAGCTGTGAAGGCTGTTGAAGAAGCACCTCCTGTCGTACAAGAAACCCAAGTTTTGGTTGAAGATACCAAGAAACTTGAGGCTTTGACAGAAGAAATAGATAGCTTAAAGACCTCACTGGAGACAGAGAAAAACAGAGCGGATGAATATGAGAAAAAATATAGTGAAGTAGAACAGTCTAGAGAAGAACAACGAAAAAAGTTAGAAGATACAGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTCGGAATCAGAGAATCAAGTTTTGCGCCAACAAGCTGTGTCTATGGCATCTATGGCACCTAATAAAGTCCTCTCTGGACGGTCTAGATCAATTCTTCAGAGAGGTGCTGATAGTGGTCATTATGGAGGGGAAGGAAGGACACCTTTGGATTTACACAGCTCTTCTATGGTTAATAGGGATTCAGAAGTTGAGGATAAACCTCAAAAATCACTTAATGAGAAACAGCAAGAAAATCAAGAATTGCTCATTAGGTGTATTGCACAGCACCTTGGCTTTGCATCAAACAGGCCAATTGCTGCTTGTATCATCTACAAGTGCTTGCTTCAATGGAGATCATTCGAAGTCGAACGCACCAGTGTCTTCGATAGGATAATTCAAACTATAGGCCATGCAATTGAGACTCAAGACAACAATGATGTCCTGGCCTATTGGTTATCCAATGCTTCGACACTTCTTTTACTACTTCAGCGCACTCTGAAAGCAAGTGGCGCTGCTGGAATGGCTCCACAACGTCGGCGATCATCGTCAGCTACACTATTTGGGAGGATGACTCAAAGTTTTAGAGGAGCTCCACAAGGAGTCAACCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACACTTTAAGGCAAGTTGAAGCAAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCCCCAAGAACATCAAGGGCAAGTTTGGTGAAGGGATCTTCTCGTTCAGTTGCCACCACGGAGGCCCAGCGCGCCTTAATTGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGAAACTTCTTGAACACCTTAAAAGCAAATAATGTGCCCCCATTTTTGGTTCGTAAGGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTACTACGACGAGAGTGTTGTTCGTTTAGCAATGGCGAATACGTCAAAGCTGGGCTGTCGGAATTAGAGGATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGATGAGCTTAAGCATATAAGACAAGCCATTGGTTTTCTGGTCATTCATCAGAAGCCAAAAAAGACGCTAGACGAAATAAGTCACGATCTATGCCCAGTACTAAGTATACAGCAGCTATATCGTATCAGTACGATGTACTGGGACGACAAGTACGGCACTCATAGTGTTTCCCCTGATGTTATATCCAATATGAGAGTGTTAATGACCGAAGATTCAAACCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCGAGCATTCCATTCTCAGTTGATGATATATCAAAGTCTATGAATCAAATAGACATAGGAGACATCGAACCGCCGCCACTAATACGGGAGAACTCGGGCTTCAGTTTCTTGTTACCACGAACAGACTAA 4614 41.18 MKNNIISGTPVNIIVGSHVWIEDPEVAWLDGQVSKITGQEAEIDASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYDGHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPHEEIEKYKLGNPRSFHYLNQSSCYELGDVSDAREYLATRRAMDIVGISAKEQEAIFRVVAAILHLGNIAFSKGKDADSSNPKDDQAKFHLKMTAELLMCDQAGLEDALCKRVMVTPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKVHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEYQDLLGASKCSFVAGLFPPLKEESSKSSKFSSIGSRFKLQLQSLMDTLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEVNYDEKSVCKKILEKQGLNGFQIGKTKVFLRAGQMAELDARRAEVLSSAAKTIQRRTRTHIARKHFIALRKATIRIQSRWRGKLACKQFKNLKREAAAVKIQKNARRFHARKDYKRLQSSVLTVQTGLRAMAARNKFRFMKQTKAAIIIQARWRCHKAASYYTKLKRGAVVAQCRWRGKVGRKELRKLKMAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQETAKYQNSVQELQAKLDETNVLLVKEREAVKAVEEAPPVVQETQVLVEDTKKLEALTEEIDSLKTSLETEKNRADEYEKKYSEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNSESENQVLRQQAVSMASMAPNKVLSGRSRSILQRGADSGHYGGEGRTPLDLHSSSMVNRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFASNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANNVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEDWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDISKSMNQIDIGDIEPPPLIRENSGFSFLLPRTD 1537
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 1805906 1820808 + Sed0001866.1 Sed11g0201 728847
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0201 1537 FunFam Class V myosin 445 580 - -
Sed11g0201 1537 ProSiteProfiles Myosin motor domain profile. 68 738 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 ProSiteProfiles Dilute domain profile. 1167 1480 IPR002710 -
Sed11g0201 1537 SMART MYSc_2a 63 739 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 PANTHER MYOSIN 838 1479 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Sed11g0201 1537 FunFam Myosin heavy chain 258 313 - -
Sed11g0201 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 791 IPR027417 -
Sed11g0201 1537 Pfam IQ calmodulin-binding motif 743 761 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 Pfam IQ calmodulin-binding motif 838 857 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 Pfam IQ calmodulin-binding motif 791 810 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 Pfam IQ calmodulin-binding motif 765 785 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 Pfam Myosin N-terminal SH3-like domain 15 58 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 Coils Coil 883 917 - -
Sed11g0201 1537 Gene3D Myosin VI head, motor domain, U50 subdomain 318 607 - -
Sed11g0201 1537 Pfam DIL domain 1356 1459 IPR002710 -
Sed11g0201 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 791 889 IPR027417 -
Sed11g0201 1537 MobiDBLite consensus disorder prediction 994 1034 - -
Sed11g0201 1537 ProSiteProfiles IQ motif profile. 789 818 - -
Sed11g0201 1537 FunFam unconventional myosin-Va 792 839 - -
Sed11g0201 1537 Coils Coil 936 956 - -
Sed11g0201 1537 CDD MyosinXI_CBD 1118 1503 IPR037975 GO:0007015(InterPro)
Sed11g0201 1537 ProSiteProfiles IQ motif profile. 837 863 - -
Sed11g0201 1537 FunFam unconventional myosin-Va 743 791 - -
Sed11g0201 1537 FunFam unconventional myosin-Va 840 887 - -
Sed11g0201 1537 Gene3D - 673 736 - -
Sed11g0201 1537 Gene3D Kinesin motor domain 71 668 IPR036961 -
Sed11g0201 1537 ProSiteProfiles IQ motif profile. 812 841 - -
Sed11g0201 1537 Coils Coil 973 1056 - -
Sed11g0201 1537 SMART iq_5 740 762 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 SMART iq_5 836 858 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 SMART iq_5 763 785 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 SMART iq_5 859 881 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 SMART iq_5 788 810 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 SMART iq_5 811 833 IPR000048 GO:0005515(InterPro)
Sed11g0201 1537 PRINTS Myosin heavy chain signature 155 180 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 PRINTS Myosin heavy chain signature 488 516 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 PRINTS Myosin heavy chain signature 98 117 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 PRINTS Myosin heavy chain signature 202 229 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 PRINTS Myosin heavy chain signature 435 463 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 Gene3D - 791 838 - -
Sed11g0201 1537 Gene3D - 739 790 - -
Sed11g0201 1537 Gene3D - 839 888 - -
Sed11g0201 1537 Gene3D - 258 316 - -
Sed11g0201 1537 SMART DIL_2 1355 1462 IPR002710 -
Sed11g0201 1537 Gene3D - 445 629 - -
Sed11g0201 1537 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 14 63 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 CDD MYSc_Myo11 82 726 IPR036018 -
Sed11g0201 1537 ProSiteProfiles IQ motif profile. 764 793 - -
Sed11g0201 1537 Pfam Myosin head (motor domain) 70 726 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed11g0201 1537 ProSiteProfiles IQ motif profile. 741 768 - -
Sed11g0201 1537 ProSiteProfiles IQ motif profile. 860 889 - -
Sed11g0201 1537 MobiDBLite consensus disorder prediction 1078 1119 - -
Sed11g0201 1537 FunFam Myosin 2 318 433 - -
Sed11g0201 1537 MobiDBLite consensus disorder prediction 1102 1118 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0895 Sed-Chr8:7500253 Sed11g0201 Sed-Chr11:1805906 0.00E+00 dispersed
Sed08g1805 Sed-Chr8:32762590 Sed11g0201 Sed-Chr11:1805906 0.00E+00 dispersed
Sed09g1034 Sed-Chr9:33741678 Sed11g0201 Sed-Chr11:1805906 0.00E+00 dispersed
Sed09g1420 Sed-Chr9:38078234 Sed11g0201 Sed-Chr11:1805906 0.00E+00 dispersed
Sed09g1421 Sed-Chr9:38079153 Sed11g0201 Sed-Chr11:1805906 0.00E+00 dispersed
Sed11g0201 Sed-Chr11:1805906 Sed12g0428 Sed-Chr12:2572455 0.00E+00 dispersed
Sed11g0201 Sed-Chr11:1805906 Sed08g1586 Sed-Chr8:30963986 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0201 K10357 - csv:101206606 2791.14