Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0218 ATGGCGAAGACGACGAAGGAAGAAGATGAACCAATTATCATTCATTCCCCTATGAATTCCAATACCCATGTAATGTTTTCTCTTTTCCTCGTCTTGTTTGTGATCTGTAATGGCGTTTTTTCGGCTCCCGATCCGCCGTTGTTGTTGCGGTGCGGTTCCGATGAAGATGGCACCGATGAATACAGTCGGAAATGGACCTCCGATTCGAAATTCGTCGACGCGAAAAACACCCTTGCGTTGCCGGTGGGGTTTCAAGATCCTTCGATGTCGTCGCAGGTTCCGTACATGGAGGCTAGGGTTTTCACTGCTGCGACGGCGTATAAGTTTCCGATCAAACGCGGTAATCGTTATTGGCTTCGACTCCATTTTTATCCTTCTACTTATGGCCCTCATGATTCTCAAAAGGCCCTTTTCACTGTTACTGCAAATGATTTATCCCTTTTGAAGAATTTTAGCGCTTATATTACATGTGAGGCCTACACTCAGGCCTACCTTGTTCGTGAATTTACTCTAGCGCCTTTGGAAACGGATACTCTAATTTTGACCTTCACCCCTGTTTCTGGATTTGCTTTTGTGAATGGGATTGAATTGATTCAAATGCCGGAGATCTTCGGGGACGCGGTAATGGTTGGTGCAGGGAATCAAGCCATGGATATTAAGGGGATGAGTATGCAGACGGTTGTGCGATTGAACGTCGGCGGGGGCTACATTTCTCCAGTGAATGATTCCGGTTTGAGTAGAACATGGTTTGATGATTTTCCTTATATTTATGGTGCTTCTGAGGGTGTTGAACTTGTAGCTTCTAAGAGGTTGGTGATTGATTATAAAGATATGCCGAAGTATATTGCGCCGTTGGACGTTTACAGGACATTGAGATCAATGGGGGCAAATAGCAATGTGAATTCTGAATTCAATTTGACATGGATGTTTCCTAATATTGATCCGGGATTCATGTATCTTATGAGGTTGCATTTCTGTGATCTGACTTCGAGTAGAGCAAATCAGATGGTGTTTGATGTGGCCATTAACAATCAAACTACGGATGGGATGGGGATCGATGTGTTTTCTTGGGCGGGTTCTAAGGGGGTTCCAAAATTCAGGGACTATGTTGTGTTTACTCCAGCTGCACCAACAATGCAGCAGATTTGGCTGGCATTAAGTCCTGACATGTCGGATAAACCCGAGTTTGAGGATGCTATGTTGAATGGGATCGAGATCTTCAAGCTCGAATCTGGGAAGAACTTGGCAGGGAAGAATCCTCAAGCCTCGGAATTTAGGATGAAGGTTGATGAGATTGAAACAGAGAGAAATTTTGAAACAATGGGCCACAAAGCTGAAGTGATTGGAGGAGCTGCAGGTGGGGCTGCAGCTTTTGTTGTAGTGGCACTTTGTTGTGCAGCGTACCAAAGGAAAAATAGAGTGCCAGGGACTGATTCGCACACGACTAGCTGGTTACCAATCTATGGGAATTCACATTCGAGTGGTAGCAAATCGACGATATCTGGTAAGAGTACGGCGAGTAATTTGGCGCAAGGTTTGGCCCGACATTTTTCGCTTCCAGAGATTTTACATGCTACCAAGAACTTTAGTGACTCTAATGTGATTGGGGTGGGAGGATTTGGGAAGGTGTACAAGGGAGTGGTTGATGGAGGGACAAAAGTTGCTATTAAAAGGTCGAACCCACAGTCAGAACAAGGAGTTCACGAGTTCCTTACGGAAATTGATTTGCTTTCGAAGCTGAGGCACAAACATCTGGTATCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTGGTATATGATTATATGGGTTTGGGAACTTTGAGGGAACATCTATATAAGACCAATAATAAACTTCTCTCATGGAAACAAAGGCTAGAAATTTGTATAGGAGCAGCTAGAGGACTTCATTACCTTCACACAGGTGCACAGTACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGCAGCGAAAGTTTCCGATTTCGGGCTCTCAAAAACTGGTCCGAACATGTCTACCGGTCATGTTAGCACGGTAGTTAAGGGTAGCTTCGGCTACTTAGATCCAGAGTACTTTCGAAGGCAGCAATTGACTGAAAAATCTGATGTCTATTCTTTTGGAGTTGTCCTGTTTGAAGTGTTGTGTGCACGGCCTGCTCTAAATCCAAGCCTGCCGAAGGAACAGGTTAGTCTTGCGGATTGGGCATTGCACTGCAAACGAAAGGGAGTTCTTGATGATCTCATCGATCCCCACCTCAAAGGAAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCTGATGCAGCTGAGAAATGCCTGGATGATCATGGAGCGGAGCGACCGTCAATGGGTGATGTGTTGTGGAACCTTGAATTTGCTCTCCAACTACAAGAAAGTGCCGATGGTGGCGGTTCAAGTCACAGATCGAGGATGAACGAAGAAGATAACCGCAGAAAGCAAGACATGGCTGCACATTACAACAACCTCAGCCTTGGAAGTGAGGAAGATTTATTTGAAACTAGCGAACAAAACGATTCTGCAATCTTCTCCCAACTTGTCCATCCGAAAGGTAGATAA 2604 44.55 MAKTTKEEDEPIIIHSPMNSNTHVMFSLFLVLFVICNGVFSAPDPPLLLRCGSDEDGTDEYSRKWTSDSKFVDAKNTLALPVGFQDPSMSSQVPYMEARVFTAATAYKFPIKRGNRYWLRLHFYPSTYGPHDSQKALFTVTANDLSLLKNFSAYITCEAYTQAYLVREFTLAPLETDTLILTFTPVSGFAFVNGIELIQMPEIFGDAVMVGAGNQAMDIKGMSMQTVVRLNVGGGYISPVNDSGLSRTWFDDFPYIYGASEGVELVASKRLVIDYKDMPKYIAPLDVYRTLRSMGANSNVNSEFNLTWMFPNIDPGFMYLMRLHFCDLTSSRANQMVFDVAINNQTTDGMGIDVFSWAGSKGVPKFRDYVVFTPAAPTMQQIWLALSPDMSDKPEFEDAMLNGIEIFKLESGKNLAGKNPQASEFRMKVDEIETERNFETMGHKAEVIGGAAGGAAAFVVVALCCAAYQRKNRVPGTDSHTTSWLPIYGNSHSSGSKSTISGKSTASNLAQGLARHFSLPEILHATKNFSDSNVIGVGGFGKVYKGVVDGGTKVAIKRSNPQSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGLGTLREHLYKTNNKLLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWAAKVSDFGLSKTGPNMSTGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLIDPHLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSHRSRMNEEDNRRKQDMAAHYNNLSLGSEEDLFETSEQNDSAIFSQLVHPKGR 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1995323 1998712 - Sed0020005.1 Sed11g0218 728864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0218 867 CDD STKc_IRAK 535 800 - -
Sed11g0218 867 SUPERFAMILY Protein kinase-like (PK-like) 511 802 IPR011009 -
Sed11g0218 867 FunFam Receptor-like protein kinase FERONIA 605 820 - -
Sed11g0218 867 FunFam receptor-like protein kinase FERONIA 491 604 - -
Sed11g0218 867 MobiDBLite consensus disorder prediction 816 831 - -
Sed11g0218 867 FunFam FERONIA receptor-like kinase 46 201 - -
Sed11g0218 867 Gene3D Transferase(Phosphotransferase) domain 1 605 823 - -
Sed11g0218 867 FunFam FERONIA receptor-like kinase 222 410 - -
Sed11g0218 867 Pfam Protein tyrosine and serine/threonine kinase 533 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0218 867 PANTHER OS07G0166700 PROTEIN 517 807 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed11g0218 867 MobiDBLite consensus disorder prediction 808 835 - -
Sed11g0218 867 Pfam Malectin-like domain 50 408 IPR024788 -
Sed11g0218 867 SMART serkin_6 529 802 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0218 867 Gene3D Phosphorylase Kinase; domain 1 490 604 - -
Sed11g0218 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0218 867 Gene3D - 222 410 - -
Sed11g0218 867 Gene3D - 47 201 - -
Sed11g0218 867 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524(InterPro)
Sed11g0218 867 ProSiteProfiles Protein kinase domain profile. 529 802 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2427 Sed-Chr3:21120758 Sed11g0218 Sed-Chr11:1995323 1.90E-216 dispersed
Sed11g0218 Sed-Chr11:1995323 Sed14g0568 Sed-Chr14:5681470 3.30E-229 dispersed
Sed11g0218 Sed-Chr11:1995323 Sed11g0219 Sed-Chr11:1995323 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79884 PF12819 Malectin_like 8.80E-34 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0218 - - - 0.0