Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0219 ATGGATATTAAGGGGATGAGTATGCAGACGGTTGTGCGATTGAACGTCGGCGGGGGCTACATTTCTCCAGTGAATGATTCCGGTTTGAGTAGAACATGGTTTGATGATTTTCCTTATATTTATGGTGCTTCTGAGGGTGTTGAACTTGTAGCTTCTAAGAGGTTGGTGATTGATTATAAAGATATGCCGAAGTATATTGCGCCGTTGGACGTTTACAGGACATTGAGATCAATGGGGGCAAATAGCAATGTGAATTCTGAATTCAATTTGACATGGATGTTTCCTAATATTGATCCGGGATTCATGTATCTTATGAGGTTGCATTTCTGTGATCTGACTTCGAGTAGAGCAAATCAGATGGTGTTTGATGTGGCCATTAACAATCAAACTACGGATGGGATGGGGATCGATGTGTTTTCTTGGGCGGGTTCTAAGGGGGTTCCAAAATTCAGGGACTATGTTGTGTTTACTCCAGCTGCACCAACAATGCAGCAGATTTGGCTGGCATTAAGTCCTGACATGTCGGATAAACCCGAGTTTGAGGATGCTATGTTGAATGGGATCGAGATCTTCAAGCTCGAATCTGGGAAGAACTTGGCAGGGAAGAATCCTCAAGCCTCGGAATTTAGGATGAAGGTTGATGAGATTGAAACAGAGAGAAATTTTGAAACAATGGGCCACAAAGCTGAAGTGATTGGAGGAGCTGCAGGTGGGGCTGCAGCTTTTGTTGTAGTGGCACTTTGTTGTGCAGCGTACCAAAGGAAAAATAGAGTGCCAGGGACTGATTCGCACACGACTAGCTGGTTACCAATCTATGGGAATTCACATTCGAGTGGTAGCAAATCGACGATATCTGGTAAGAGTACGGCGAGTAATTTGGCGCAAGGTTTGGCCCGACATTTTTCGCTTCCAGAGATTTTACATGCTACCAAGAACTTTAGTGACTCTAATGTGATTGGGGTGGGAGGATTTGGGAAGGTGTACAAGGGAGTGGTTGATGGAGGGACAAAAGTTGCTATTAAAAGGTCGAACCCACAGTCAGAACAAGGAGTTCACGAGTTCCTTACGGAAATTGATTTGCTTTCGAAGCTGAGGCACAAACATCTGGTATCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTGGTATATGATTATATGGGTTTGGGAACTTTGAGGGAACATCTATATAAGACCAATAATAAACTTCTCTCATGGAAACAAAGGCTAGAAATTTGTATAGGAGCAGCTAGAGGACTTCATTACCTTCACACAGGTGCACAGTACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGCAGCGAAAGTTTCCGATTTCGGGCTCTCAAAAACTGGTCCGAACATGTCTACCGGTCATGTTAGCACGGTAGTTAAGGGTAGCTTCGGCTACTTAGATCCAGAGTACTTTCGAAGGCAGCAATTGACTGAAAAATCTGATGTCTATTCTTTTGGAGTTGTCCTGTTTGAAGTGTTGTGTGCACGGCCTGCTCTAAATCCAAGCCTGCCGAAGGAACAGGTTAGTCTTGCGGATTGGGCATTGCACTGCAAACGAAAGGGAGTTCTTGATGATCTCATCGATCCCCACCTCAAAGGAAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCTGATGCAGCTGAGAAATGCCTGGATGATCATGGAGCGGAGCGACCGTCAATGGGTGATGTGTTGTGGAACCTTGAATTTGCTCTCCAACTACAAGAAAGTGCCGATGGTGGCGGTTCAAGTCACAGATCGAGGATGAACGAAGAAGATAACCGCAGAAAGCAAGACATGGCTGCACATTACAACAACCTCAGCCTTGGAAGTGAGGAAGATTTATTTGAAACTAGCGAACAAAACGATTCTGCAATCTTCTCCCAACTTGTCCATCCGAAAGGTAGATAA 1956 44.07 MDIKGMSMQTVVRLNVGGGYISPVNDSGLSRTWFDDFPYIYGASEGVELVASKRLVIDYKDMPKYIAPLDVYRTLRSMGANSNVNSEFNLTWMFPNIDPGFMYLMRLHFCDLTSSRANQMVFDVAINNQTTDGMGIDVFSWAGSKGVPKFRDYVVFTPAAPTMQQIWLALSPDMSDKPEFEDAMLNGIEIFKLESGKNLAGKNPQASEFRMKVDEIETERNFETMGHKAEVIGGAAGGAAAFVVVALCCAAYQRKNRVPGTDSHTTSWLPIYGNSHSSGSKSTISGKSTASNLAQGLARHFSLPEILHATKNFSDSNVIGVGGFGKVYKGVVDGGTKVAIKRSNPQSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGLGTLREHLYKTNNKLLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWAAKVSDFGLSKTGPNMSTGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLIDPHLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSHRSRMNEEDNRRKQDMAAHYNNLSLGSEEDLFETSEQNDSAIFSQLVHPKGR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1995323 1998712 - Sed0020005.2 Sed11g0219 728865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0219 651 SMART serkin_6 313 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0219 651 FunFam FERONIA receptor-like kinase 6 194 - -
Sed11g0219 651 MobiDBLite consensus disorder prediction 592 619 - -
Sed11g0219 651 Gene3D - 6 194 - -
Sed11g0219 651 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524(InterPro)
Sed11g0219 651 Gene3D Transferase(Phosphotransferase) domain 1 389 607 - -
Sed11g0219 651 CDD STKc_IRAK 319 584 - -
Sed11g0219 651 Pfam Protein tyrosine and serine/threonine kinase 317 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0219 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0219 651 SUPERFAMILY Protein kinase-like (PK-like) 295 586 IPR011009 -
Sed11g0219 651 FunFam Receptor-like protein kinase FERONIA 389 604 - -
Sed11g0219 651 Pfam Malectin-like domain 5 192 IPR024788 -
Sed11g0219 651 MobiDBLite consensus disorder prediction 600 615 - -
Sed11g0219 651 PANTHER OS07G0166700 PROTEIN 301 591 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed11g0219 651 Gene3D Phosphorylase Kinase; domain 1 274 388 - -
Sed11g0219 651 FunFam receptor-like protein kinase FERONIA 275 388 - -
Sed11g0219 651 ProSiteProfiles Protein kinase domain profile. 313 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0219 Sed-Chr11:1995323 Sed14g0568 Sed-Chr14:5681470 7.80E-199 dispersed
Sed11g0218 Sed-Chr11:1995323 Sed11g0219 Sed-Chr11:1995323 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79885 PF07714 PK_Tyr_Ser-Thr 1.90E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0219 - - - 0.0