Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0251 ATGGATCTTGAGCTTGATTGCTCTGAATTTGTTGAGGTTGATCCCACTGGCAGATATGGCAGATATAATGAAATTTTGGGGAAAGGAGCTTCTAAAACAGTTTACAGAGCATTTGATGAGTATGAAGGAATTGAGGTAGCTTGGAATCAAGTGAAACTTTATGACTTCTTGCAAAGTCCTGAAGATCTGGAAAGGCTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCACAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATAATCCATAGAGATCTCAAGTGTGACAATATATTTGTTAATGGAAATCAAGGAGAAGTTAAGATTGGTGATCTTGGACTTGCAGCATTCCTCAGGAAATCTCATGCTGATCATTGCGTGGGGACACCAGAGTTTATGGCTCCTGAAGTTTATGCTGAGGCATATAACGAATTAGTCGATATTTACTCATTCGGAATGTGTATTCTGGAGATGATAACTTTTGAATATCCATACAGTGAGTGCACTCATCCTGCTCAGATCTACAAGAAAGTCGTATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAGTTCATCAACAAGTGTTTGGCAACGGTTTCATTTAGGTTCTCGGCAGCAGAACTTTTGAATGACCCTTTTCTTCAAGTTGATAATGGAGAATATGATCTACGACCTGTCGATTACGGGAGAGGATTGGACGATGTATGCCCTCTTATAAGACAGCCATATCTAGATCTTCATAGAAGTGACAGCTCCTTTTGTAATGGATATCAATATGATTATAGTTTTGAAGCTTCAAGTGAATCTGGTTATCATCCAATTGATAATGAAACCAATGGAATTGAACTTTTTGAATATTGTGAAGGTGAACATTCTGAAGATGTTGATATTAGTATTAAAGGTAAGATGAGAGAAGATGGTGACATCTTCTTAAGACTCAGAATTGCTGATAAAGAAGGACGTATTAGGAACATCTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTTGCAGAGCTGGATATGACAGATCAAGACGTGACCAGAATTGCCGATATGATTGACGGAGAAATCGCATTGTTGGTGCCTGATTGGAGGCCGGGTCCGGGAATTGAGGAAACGCCCCGCCTTACAAATCAAAGCTATTGTCATAATTGTGCTACTACTCCTTACAGCAATGCTTCAAATGGTGCTTTGTTGAGAAATCCTGATGGAAAGAACTCAGAGATGGCTCAATGCTGTGGACACCGATATGCTTCGGTGCACGGTCGTTTCGAGGAGATAATGTATCAAGCTGACGAGTCCGAGCATCATCCTGTCGAAGGTGCATCAAATACATCGAGCCATTCCGATTGCCTAAATCCTCCTGAAATATGGAATCGTCATGAAAGCCGTGAACTTAGTTCAATGAGTTCACGACACAGCCATTCGGATGAAGATTACGAGAAAGCGGACCGACCAGTTACGGTCACAGATACAAAAGAAATGATACTCGAAAGTAAAACTGCTCCCGATAAAAAAACTACGCTTAGGGACCTAATGGATTCTCTAACTTTCTCAGAAACTCCATCATATGATCATCCAGATATTTATGAAAATGATGCTCAGCAAGAAATGAGATGGATTAAGGCAAAGTACCAAATGGAATTAAGCAAGCTTAAAGATCAACAGTTAAAGCTTTTGTCAAAATCTTCAAGTTATGAAGACATACAACAAAAAATGGACAATGGAACACTGCAAAGCAACCACAACCAAATCCTTGATAGGTCAACTCGAGGCACGAACCGAAGTAGTTATGACAGCCATGTCGTTACGAGTAATAGCCGTTACGGTTTAGATGCTCGAATGGCTCGAAATCACAAAGCTGTGGAATCCTCTATTGTGGAGAAAGTTGGCACTGCTAAAAATGCTTGCACTGGTTCATTTCATCCAAGCTCCCTTCATAGAGCAATCTCTCTTCCAGTTGATGCTATTCATATATAA 2193 40.22 MDLELDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAFLRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFINKCLATVSFRFSAAELLNDPFLQVDNGEYDLRPVDYGRGLDDVCPLIRQPYLDLHRSDSSFCNGYQYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGDIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDMTDQDVTRIADMIDGEIALLVPDWRPGPGIEETPRLTNQSYCHNCATTPYSNASNGALLRNPDGKNSEMAQCCGHRYASVHGRFEEIMYQADESEHHPVEGASNTSSHSDCLNPPEIWNRHESRELSSMSSRHSHSDEDYEKADRPVTVTDTKEMILESKTAPDKKTTLRDLMDSLTFSETPSYDHPDIYENDAQQEMRWIKAKYQMELSKLKDQQLKLLSKSSSYEDIQQKMDNGTLQSNHNQILDRSTRGTNRSSYDSHVVTSNSRYGLDARMARNHKAVESSIVEKVGTAKNACTGSFHPSSLHRAISLPVDAIHI 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2244660 2248629 + Sed0008884.1 Sed11g0251 728897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0251 730 Gene3D Phosphorylase Kinase; domain 1 6 101 - -
Sed11g0251 730 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0251 730 SMART serkin_6 20 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0251 730 FunFam probable serine/threonine-protein kinase WNK9 103 282 - -
Sed11g0251 730 Gene3D Transferase(Phosphotransferase) domain 1 103 283 - -
Sed11g0251 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0251 730 SUPERFAMILY Protein kinase-like (PK-like) 23 278 IPR011009 -
Sed11g0251 730 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 632 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed11g0251 730 MobiDBLite consensus disorder prediction 505 556 - -
Sed11g0251 730 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0251 730 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 428 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed11g0251 730 Gene3D - 370 433 - -
Sed11g0251 730 CDD STKc_WNK 18 277 - -
Sed11g0251 730 MobiDBLite consensus disorder prediction 526 556 - -
Sed11g0251 730 FunFam Probable serine/threonine-protein kinase WNK1 5 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0674 Sed-Chr5:5034761 Sed11g0251 Sed-Chr11:2244660 1.50E-46 dispersed
Sed08g1297 Sed-Chr8:26904542 Sed11g0251 Sed-Chr11:2244660 6.40E-203 dispersed
Sed08g1298 Sed-Chr8:26904542 Sed11g0251 Sed-Chr11:2244660 5.10E-145 dispersed
Sed08g1632 Sed-Chr8:31481504 Sed11g0251 Sed-Chr11:2244660 0.00E+00 dispersed
Sed08g2940 Sed-Chr8:40156396 Sed11g0251 Sed-Chr11:2244660 2.30E-97 dispersed
Sed09g0759 Sed-Chr9:14561273 Sed11g0251 Sed-Chr11:2244660 9.90E-211 dispersed
Sed09g0760 Sed-Chr9:14561273 Sed11g0251 Sed-Chr11:2244660 5.30E-190 dispersed
Sed11g0251 Sed-Chr11:2244660 Sed11g0253 Sed-Chr11:2244660 0.00E+00 dispersed
Sed11g0251 Sed-Chr11:2244660 Sed11g0252 Sed-Chr11:2244660 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79888 PF00069 Pkinase 3.70E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0251 K08867 - csv:101219552 1253.81