Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0252 ATGGGTTACAGAGCATTTGATGAGTATGAAGGAATTGAGGTAGCTTGGAATCAAGTGAAACTTTATGACTTCTTGCAAAGTCCTGAAGATCTGGAAAGGCTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCACAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATAATCCATAGAGATCTCAAGTGTGACAATATATTTGTTAATGGAAATCAAGGAGAAGTTAAGATTGGTGATCTTGGACTTGCAGCATTCCTCAGGAAATCTCATGCTGATCATTGCGTGGGGACACCAGAGTTTATGGCTCCTGAAGTTTATGCTGAGGCATATAACGAATTAGTCGATATTTACTCATTCGGAATGTGTATTCTGGAGATGATAACTTTTGAATATCCATACAGTGAGTGCACTCATCCTGCTCAGATCTACAAGAAAGTCGTATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAGTTCATCAACAAGTGTTTGGCAACGGTTTCATTTAGGTTCTCGGCAGCAGAACTTTTGAATGACCCTTTTCTTCAAGTTGATAATGGAGAATATGATCTACGACCTGTCGATTACGGGAGAGGATTGGACGATGTATGCCCTCTTATAAGACAGCCATATCTAGATCTTCATAGAAGTGACAGCTCCTTTTGTAATGGATATCAATATGATTATAGTTTTGAAGCTTCAAGTGAATCTGGTTATCATCCAATTGATAATGAAACCAATGGAATTGAACTTTTTGAATATTGTGAAGGTGAACATTCTGAAGATGTTGATATTAGTATTAAAGGTAAGATGAGAGAAGATGGTGACATCTTCTTAAGACTCAGAATTGCTGATAAAGAAGGACGTATTAGGAACATCTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTTGCAGAGCTGGATATGACAGATCAAGACGTGACCAGAATTGCCGATATGATTGACGGAGAAATCGCATTGTTGGTGCCTGATTGGAGGCCGGGTCCGGGAATTGAGGAAACGCCCCGCCTTACAAATCAAAGCTATTGTCATAATTGTGCTACTACTCCTTACAGCAATGCTTCAAATGGTGCTTTGTTGAGAAATCCTGATGGAAAGAACTCAGAGATGGCTCAATGCTGTGGACACCGATATGCTTCGGTGCACGGTCGTTTCGAGGAGATAATGTATCAAGCTGACGAGTCCGAGCATCATCCTGTCGAAGGTGCATCAAATACATCGAGCCATTCCGATTGCCTAAATCCTCCTGAAATATGGAATCGTCATGAAAGCCGTGAACTTAGTTCAATGAGTTCACGACACAGCCATTCGGATGAAGATTACGAGAAAGCGGACCGACCAGTTACGGTCACAGATACAAAAGAAATGATACTCGAAAGTAAAACTGCTCCCGATAAAAAAACTACGCTTAGGGACCTAATGGATTCTCTAACTTTCTCAGAAACTCCATCATATGATCATCCAGATATTTATGAAAATGATGCTCAGCAAGAAATGAGATGGATTAAGGCAAAGTACCAAATGGAATTAAGCAAGCTTAAAGATCAACAGTTAAAGCTTTTGTCAAAATCTTCAAGTTATGAAGACATACAACAAAAAATGGACAATGGAACACTGCAAAGCAACCACAACCAAATCCTTGATAGGTCAACTCGAGGCACGAACCGAAGTAGTTATGACAGCCATGTCGTTACGAGTAATAGCCGTTACGGTTTAGATGCTCGAATGGCTCGAAATCACAAAGCTGTGGAATCCTCTATTGTGGAGAAAGTTGGCACTGCTAAAAATGCTTGCACTGGTTCATTTCATCCAAGCTCCCTTCATAGAGCAATCTCTCTTCCAGTTGATGCTATTCATATATAA 2097 40.3 MGYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAFLRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFINKCLATVSFRFSAAELLNDPFLQVDNGEYDLRPVDYGRGLDDVCPLIRQPYLDLHRSDSSFCNGYQYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGDIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDMTDQDVTRIADMIDGEIALLVPDWRPGPGIEETPRLTNQSYCHNCATTPYSNASNGALLRNPDGKNSEMAQCCGHRYASVHGRFEEIMYQADESEHHPVEGASNTSSHSDCLNPPEIWNRHESRELSSMSSRHSHSDEDYEKADRPVTVTDTKEMILESKTAPDKKTTLRDLMDSLTFSETPSYDHPDIYENDAQQEMRWIKAKYQMELSKLKDQQLKLLSKSSSYEDIQQKMDNGTLQSNHNQILDRSTRGTNRSSYDSHVVTSNSRYGLDARMARNHKAVESSIVEKVGTAKNACTGSFHPSSLHRAISLPVDAIHI 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2244660 2248629 + Sed0008884.2 Sed11g0252 728898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0252 698 Gene3D - 338 401 - -
Sed11g0252 698 Gene3D Phosphorylase Kinase; domain 1 2 69 - -
Sed11g0252 698 Pfam Protein kinase domain 5 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0252 698 SUPERFAMILY Protein kinase-like (PK-like) 3 246 IPR011009 -
Sed11g0252 698 MobiDBLite consensus disorder prediction 473 524 - -
Sed11g0252 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0252 698 SMART serkin_6 3 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0252 698 Gene3D Transferase(Phosphotransferase) domain 1 71 251 - -
Sed11g0252 698 FunFam Probable serine/threonine-protein kinase WNK1 1 69 - -
Sed11g0252 698 MobiDBLite consensus disorder prediction 494 524 - -
Sed11g0252 698 ProSiteProfiles Protein kinase domain profile. 1 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0252 698 FunFam probable serine/threonine-protein kinase WNK9 71 250 - -
Sed11g0252 698 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 341 396 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed11g0252 698 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 600 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed11g0252 698 CDD STKc_WNK 3 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0252 Sed-Chr11:2244660 Sed14g0580 Sed-Chr14:5812680 3.70E-106 dispersed
Sed11g0251 Sed-Chr11:2244660 Sed11g0252 Sed-Chr11:2244660 0.00E+00 tandem
Sed11g0252 Sed-Chr11:2244660 Sed11g0253 Sed-Chr11:2244660 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79889 PF00069 Pkinase 6.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0252 K08867 - csv:101219552 1186.79