Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0253 ATGAAATTCTACACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATAATCCATAGAGATCTCAAGTGTGACAATATATTTGTTAATGGAAATCAAGGAGAAGTTAAGATTGGTGATCTTGGACTTGCAGCATTCCTCAGGAAATCTCATGCTGATCATTGCGTGGGGACACCAGAGTTTATGGCTCCTGAAGTTTATGCTGAGGCATATAACGAATTAGTCGATATTTACTCATTCGGAATGTGTATTCTGGAGATGATAACTTTTGAATATCCATACAGTGAGTGCACTCATCCTGCTCAGATCTACAAGAAAGTCGTATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAGTTCATCAACAAGTGTTTGGCAACGGTTTCATTTAGGTTCTCGGCAGCAGAACTTTTGAATGACCCTTTTCTTCAAGTTGATAATGGAGAATATGATCTACGACCTGTCGATTACGGGAGAGGATTGGACGATGTATGCCCTCTTATAAGACAGCCATATCTAGATCTTCATAGAAGTGACAGCTCCTTTTGTAATGGATATCAATATGATTATAGTTTTGAAGCTTCAAGTGAATCTGGTTATCATCCAATTGATAATGAAACCAATGGAATTGAACTTTTTGAATATTGTGAAGGTGAACATTCTGAAGATGTTGATATTAGTATTAAAGGTAAGATGAGAGAAGATGGTGACATCTTCTTAAGACTCAGAATTGCTGATAAAGAAGGACGTATTAGGAACATCTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTTGCAGAGCTGGATATGACAGATCAAGACGTGACCAGAATTGCCGATATGATTGACGGAGAAATCGCATTGTTGGTGCCTGATTGGAGGCCGGGTCCGGGAATTGAGGAAACGCCCCGCCTTACAAATCAAAGCTATTGTCATAATTGTGCTACTACTCCTTACAGCAATGCTTCAAATGGTGCTTTGTTGAGAAATCCTGATGGAAAGAACTCAGAGATGGCTCAATGCTGTGGACACCGATATGCTTCGGTGCACGGTCGTTTCGAGGAGATAATGTATCAAGCTGACGAGTCCGAGCATCATCCTGTCGAAGGTGCATCAAATACATCGAGCCATTCCGATTGCCTAAATCCTCCTGAAATATGGAATCGTCATGAAAGCCGTGAACTTAGTTCAATGAGTTCACGACACAGCCATTCGGATGAAGATTACGAGAAAGCGGACCGACCAGTTACGGTCACAGATACAAAAGAAATGATACTCGAAAGTAAAACTGCTCCCGATAAAAAAACTACGCTTAGGGACCTAATGGATTCTCTAACTTTCTCAGAAACTCCATCATATGATCATCCAGATATTTATGAAAATGATGCTCAGCAAGAAATGAGATGGATTAAGGCAAAGTACCAAATGGAATTAAGCAAGCTTAAAGATCAACAGTTAAAGCTTTTGTCAAAATCTTCAAGTTATGAAGACATACAACAAAAAATGGACAATGGAACACTGCAAAGCAACCACAACCAAATCCTTGATAGGTCAACTCGAGGCACGAACCGAAGTAGTTATGACAGCCATGTCGTTACGAGTAATAGCCGTTACGGTTTAGATGCTCGAATGGCTCGAAATCACAAAGCTGTGGAATCCTCTATTGTGGAGAAAGTTGGCACTGCTAAAAATGCTTGCACTGGTTCATTTCATCCAAGCTCCCTTCATAGAGCAATCTCTCTTCCAGTTGATGCTATTCATATATAA 1950 40.56 MKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAFLRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFINKCLATVSFRFSAAELLNDPFLQVDNGEYDLRPVDYGRGLDDVCPLIRQPYLDLHRSDSSFCNGYQYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGDIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDMTDQDVTRIADMIDGEIALLVPDWRPGPGIEETPRLTNQSYCHNCATTPYSNASNGALLRNPDGKNSEMAQCCGHRYASVHGRFEEIMYQADESEHHPVEGASNTSSHSDCLNPPEIWNRHESRELSSMSSRHSHSDEDYEKADRPVTVTDTKEMILESKTAPDKKTTLRDLMDSLTFSETPSYDHPDIYENDAQQEMRWIKAKYQMELSKLKDQQLKLLSKSSSYEDIQQKMDNGTLQSNHNQILDRSTRGTNRSSYDSHVVTSNSRYGLDARMARNHKAVESSIVEKVGTAKNACTGSFHPSSLHRAISLPVDAIHI 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2244660 2248629 + Sed0008884.3 Sed11g0253 728899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0253 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 63 75 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0253 649 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0253 649 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 292 347 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed11g0253 649 Gene3D - 289 352 - -
Sed11g0253 649 SMART serkin_6 1 196 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0253 649 SUPERFAMILY Protein kinase-like (PK-like) 11 197 IPR011009 -
Sed11g0253 649 FunFam probable serine/threonine-protein kinase WNK9 22 201 - -
Sed11g0253 649 Pfam Protein kinase domain 6 196 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0253 649 MobiDBLite consensus disorder prediction 424 475 - -
Sed11g0253 649 Gene3D Transferase(Phosphotransferase) domain 1 22 202 - -
Sed11g0253 649 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 551 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed11g0253 649 MobiDBLite consensus disorder prediction 445 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0251 Sed-Chr11:2244660 Sed11g0253 Sed-Chr11:2244660 0.00E+00 dispersed
Sed11g0253 Sed-Chr11:2244660 Sed14g0580 Sed-Chr14:5812680 5.00E-89 dispersed
Sed11g0252 Sed-Chr11:2244660 Sed11g0253 Sed-Chr11:2244660 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79890 PF00069 Pkinase 1.50E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0253 K08867 - csv:101219552 1088.94