Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0253 | ATGAAATTCTACACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATAATCCATAGAGATCTCAAGTGTGACAATATATTTGTTAATGGAAATCAAGGAGAAGTTAAGATTGGTGATCTTGGACTTGCAGCATTCCTCAGGAAATCTCATGCTGATCATTGCGTGGGGACACCAGAGTTTATGGCTCCTGAAGTTTATGCTGAGGCATATAACGAATTAGTCGATATTTACTCATTCGGAATGTGTATTCTGGAGATGATAACTTTTGAATATCCATACAGTGAGTGCACTCATCCTGCTCAGATCTACAAGAAAGTCGTATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAGTTCATCAACAAGTGTTTGGCAACGGTTTCATTTAGGTTCTCGGCAGCAGAACTTTTGAATGACCCTTTTCTTCAAGTTGATAATGGAGAATATGATCTACGACCTGTCGATTACGGGAGAGGATTGGACGATGTATGCCCTCTTATAAGACAGCCATATCTAGATCTTCATAGAAGTGACAGCTCCTTTTGTAATGGATATCAATATGATTATAGTTTTGAAGCTTCAAGTGAATCTGGTTATCATCCAATTGATAATGAAACCAATGGAATTGAACTTTTTGAATATTGTGAAGGTGAACATTCTGAAGATGTTGATATTAGTATTAAAGGTAAGATGAGAGAAGATGGTGACATCTTCTTAAGACTCAGAATTGCTGATAAAGAAGGACGTATTAGGAACATCTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTTGCAGAGCTGGATATGACAGATCAAGACGTGACCAGAATTGCCGATATGATTGACGGAGAAATCGCATTGTTGGTGCCTGATTGGAGGCCGGGTCCGGGAATTGAGGAAACGCCCCGCCTTACAAATCAAAGCTATTGTCATAATTGTGCTACTACTCCTTACAGCAATGCTTCAAATGGTGCTTTGTTGAGAAATCCTGATGGAAAGAACTCAGAGATGGCTCAATGCTGTGGACACCGATATGCTTCGGTGCACGGTCGTTTCGAGGAGATAATGTATCAAGCTGACGAGTCCGAGCATCATCCTGTCGAAGGTGCATCAAATACATCGAGCCATTCCGATTGCCTAAATCCTCCTGAAATATGGAATCGTCATGAAAGCCGTGAACTTAGTTCAATGAGTTCACGACACAGCCATTCGGATGAAGATTACGAGAAAGCGGACCGACCAGTTACGGTCACAGATACAAAAGAAATGATACTCGAAAGTAAAACTGCTCCCGATAAAAAAACTACGCTTAGGGACCTAATGGATTCTCTAACTTTCTCAGAAACTCCATCATATGATCATCCAGATATTTATGAAAATGATGCTCAGCAAGAAATGAGATGGATTAAGGCAAAGTACCAAATGGAATTAAGCAAGCTTAAAGATCAACAGTTAAAGCTTTTGTCAAAATCTTCAAGTTATGAAGACATACAACAAAAAATGGACAATGGAACACTGCAAAGCAACCACAACCAAATCCTTGATAGGTCAACTCGAGGCACGAACCGAAGTAGTTATGACAGCCATGTCGTTACGAGTAATAGCCGTTACGGTTTAGATGCTCGAATGGCTCGAAATCACAAAGCTGTGGAATCCTCTATTGTGGAGAAAGTTGGCACTGCTAAAAATGCTTGCACTGGTTCATTTCATCCAAGCTCCCTTCATAGAGCAATCTCTCTTCCAGTTGATGCTATTCATATATAA | 1950 | 40.56 | MKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAFLRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFINKCLATVSFRFSAAELLNDPFLQVDNGEYDLRPVDYGRGLDDVCPLIRQPYLDLHRSDSSFCNGYQYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGDIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDMTDQDVTRIADMIDGEIALLVPDWRPGPGIEETPRLTNQSYCHNCATTPYSNASNGALLRNPDGKNSEMAQCCGHRYASVHGRFEEIMYQADESEHHPVEGASNTSSHSDCLNPPEIWNRHESRELSSMSSRHSHSDEDYEKADRPVTVTDTKEMILESKTAPDKKTTLRDLMDSLTFSETPSYDHPDIYENDAQQEMRWIKAKYQMELSKLKDQQLKLLSKSSSYEDIQQKMDNGTLQSNHNQILDRSTRGTNRSSYDSHVVTSNSRYGLDARMARNHKAVESSIVEKVGTAKNACTGSFHPSSLHRAISLPVDAIHI | 649 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2244660 | 2248629 | + | Sed0008884.3 | Sed11g0253 | 728899 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0253 | 649 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 63 | 75 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0253 | 649 | ProSiteProfiles | Protein kinase domain profile. | 1 | 196 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0253 | 649 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 292 | 347 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Sed11g0253 | 649 | Gene3D | - | 289 | 352 | - | - | |
Sed11g0253 | 649 | SMART | serkin_6 | 1 | 196 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0253 | 649 | SUPERFAMILY | Protein kinase-like (PK-like) | 11 | 197 | IPR011009 | - | |
Sed11g0253 | 649 | FunFam | probable serine/threonine-protein kinase WNK9 | 22 | 201 | - | - | |
Sed11g0253 | 649 | Pfam | Protein kinase domain | 6 | 196 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0253 | 649 | MobiDBLite | consensus disorder prediction | 424 | 475 | - | - | |
Sed11g0253 | 649 | Gene3D | Transferase(Phosphotransferase) domain 1 | 22 | 202 | - | - | |
Sed11g0253 | 649 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 1 | 551 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Sed11g0253 | 649 | MobiDBLite | consensus disorder prediction | 445 | 475 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0251 | Sed-Chr11:2244660 | Sed11g0253 | Sed-Chr11:2244660 | 0.00E+00 | dispersed | |
Sed11g0253 | Sed-Chr11:2244660 | Sed14g0580 | Sed-Chr14:5812680 | 5.00E-89 | dispersed | |
Sed11g0252 | Sed-Chr11:2244660 | Sed11g0253 | Sed-Chr11:2244660 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79890 | PF00069 | Pkinase | 1.50E-37 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0253 | K08867 | - | csv:101219552 | 1088.94 |