Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0274 ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTCGAGAGAGTTGACTTGTTGAGGAAGAAACGGTGGCCATGGCGGCTGGATCTGTCGCCATTCGCCATTCTTTATACGGCCTGGCTCGCCGTCGTTGTTCCCAGTATAGACTTTGGCGATGCGTTCATTGTTTTGGGTGGACTTGTTGCTTTTCATGTTCTGGTCTTTCTCTTCACTGCCTGGTCGGTTGATTTCAAATGTTTTGTCCAGTACAGTCAGGTTAATGATATTTATCAAGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCGAAAGAAATTGTTTTGCTTAATTTTCGTAAGCATCTGGCAGGTTCTGTGTCGGCCATGGATGTTGAGGAGATCTACTTTGAATTCAGAAAACAACAATTTATTTATTCAAAGGAAAAGGAAACTTTCTGCAAGCTTCCTTATCCGACAAAAGAAACTTTTGGTTATTATCTAAAGAGTACTGGCTATGGGTCCGAGCCTAAAGTTGTAGCTGCTGTTGAAAAATGGGGACGCAATATATTCGAGTATCCACAACCTACGTTTCAGAAATTAATGAAAGAGCAGTGTATGGAACCATTTTTTGTGTTTCAGGTTTTTTGTGTGGGACTATGGTGCTTGGATGAGTATTGGTATTACAGCCTATTTACTCTGTTCATGTTGTTTATGTTTGAGTCGACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTAAGACGTGTCAAAGTAGATACTCAAACCTTAATGGTGCATCGGTGTGGAAAGTGGGTGAAACTACCTGGAACTGAGCTTTTGCCTGGAGATGTTGTCTCCATCGGGCGTGATTCTGGTCAGAGTGGTGAAGATAAATCTGTACCTGCTGATATGCTTATATTGGCTGGAAGTGCTATTGTCAATGAAGCCATTCTTACTGGGGAGTCCACACCACAATGGAAGGTTTCAACAACTGGGAGAGGAATTGAGGAGAAGTTATCAGCTAAGAGAGATAAAAGTCACATGTTGTATGGTGGGACAAAAATATTGCAGCATACTCCGGATAAGACTTTTCCTCTTAGAACCCCTGATGGTGGTTGCCTAGCAGTTGTTTTAAGAACTGGATTTGAAACAAGTCAAGGGAAACTAATGCGCACAATTTTGTTCTCGACAGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATCTTGTTCTTGGTTGTATTTGCGGTTATAGCTGCTGGTTATGTTCTTGTGAAGGGGTTGGAGGATCCCACAAGAAGCAAGTACAAGCTTTTTCTTAGTTGCTCACTTATAATCACTTCTGTTATACCTCCTGAACTACCAATGGAACTGTCAATAGCGGTTAATACATCGTTAATTGCTCTGGCGCGTCGTGGAATATTTTGTACAGAGCCTTTCCGTATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTTGATAAAACTGGAACGTTGACATCAGATGACATGGAATTTCGAGGAGTAGTTGGGTTGAGTGATAAGGAGGATTTGGAAACTGACATGACCAGTGTGTCTTTGCGCACAGTTGAAATTCTGGCTTCTTGCCATGCATTAGTATTTGTGGACAACAAGTTGGTGGGTGATCCTCTTGAAAAAGCTGCACTGAAGGGAGTTGATTGGGCTTACAAATCGGATGAGAAAGCTATTCCCAGAAAGGGAAGTGGCCACGCTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCACCGGAAACCATCCAGGAGAGGCTCACTGATATACCTTCCTTTTATGTTGAGACATATAAGAAATATACACGACAAGGCTCTCGTGTTCTTGCTCTTGCTTACAAATCAATTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGATAGGGATTTTGTGGAGAGTGACCTTACATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCAGATTCGGCCATAGTATTATCTGAGCTCAAAGGATCATCCCATGACTTGGTAATGATTACCGGTGACCAAGCTTTAACAGCATGCCACGTAGCTAGCCAAGTTCATATTACCTCAAAGAAGATTTTAATTCTCAATTCAAAGAAGGGAACTGAGGAATATGAATGGCTCTCCCCAGATGAGTTAGAGACAGTTCCCTACAGCGAGAAAGAGGTGGGAAATTTATCGGAGACATATGATCTGTGTATTGGAGGTGACTGCATCGGAATGCTTCAATGCACCTCGACTGTGCTGGATGTTATTCCATACGTTAAGGTTTTTGCAAGAGTTGCTCCAGAGCAGAAAGAACTTATATTAACCACATTCAAAGCAGTTGGAAGAATGACGTTGATGTGCGGGGATGGAACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTCCTAAACGCAGTCCCCCCTCAAAGTGGTAAATCTTCATCAGATGTATCTAAAGATGATGCTGTACGGTCTGCAAAGTCAAAGAAATCGAAGCCGTTATCCGAATTATCAGGAAAAGCACTTGTAAGTGGAGAAGGTTCTTCGAAAAGCAAAGTTGGTGCGAAACTTGATTCCCTATCTGAACAAGCAAGTAACCGTCCAAGGACACCTGCAGAGATTCAAAGACAAAAGCTAAAGAAAATGATGGATGAACTAAATGAAGAGGGCGATGGCCGCACTGCACCCATTGTCAAGCTTGGGGATGCATCCATGGCATCGCCATTCACTGCAAAGCATGCTTCTGTTGCCCCTACTGCCGACATTATTCGCCAAGGTCGTAGTACTCTAGTGACAACTCTCCAGATGTTTAAAATACTCGGTCTCAACTGCCTGGCCACTGCCTATGTATTGAGTGTTATGAATTTGGATGGTGTAAAGCTTGGTGATATTCAAGCAACAATCAGTGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACACGCCCGCCCGCTTCCGACACTTTCAGCTGAACGACCCCATCCACACATCTTTTGCTCTTATGTTCTCCTTTCTCTGCTAGGCCAATTTGCAATCCACTTACTTTTCTTGATTTCATCAGTAAAAGAAGCTGAAAAGTACATGCCTGATGAATGTATAGAGCCAGATTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCTTACATGGTAAGCATGATGCTTCAGGTAGCTACATTTGCTGTAAACTACATGGGTCATCCCTTCAACCAGAGTGTATCTGAAAACAAACCGTTCTTATATGCCCTCTTGGCTGCGGTCGGTTTCTTCACCGCTATTACTTCCGATTTGCTCAGAGACCTGAATGACTGGCTGAAACTGGTTCCATTGCCTGTGGGATTGAGGGACAAGCTTTTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATGGATGTTCCCAGGTAAAATCCCGGCGTGGCGGAAGCGACAACGAATGGCAGTGGCTAATCTGGAGAAGAAAGAGCTCTGA 3573 43.32 MLRFHVGGKVVERVDLLRKKRWPWRLDLSPFAILYTAWLAVVVPSIDFGDAFIVLGGLVAFHVLVFLFTAWSVDFKCFVQYSQVNDIYQADTCKIVPAKFSGSKEIVLLNFRKHLAGSVSAMDVEEIYFEFRKQQFIYSKEKETFCKLPYPTKETFGYYLKSTGYGSEPKVVAAVEKWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVKVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRDSGQSGEDKSVPADMLILAGSAIVNEAILTGESTPQWKVSTTGRGIEEKLSAKRDKSHMLYGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLSDKEDLETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWAYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKYTRQGSRVLALAYKSIPDMTVSEARGLDRDFVESDLTFAGFAVFNCPIRADSAIVLSELKGSSHDLVMITGDQALTACHVASQVHITSKKILILNSKKGTEEYEWLSPDELETVPYSEKEVGNLSETYDLCIGGDCIGMLQCTSTVLDVIPYVKVFARVAPEQKELILTTFKAVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPQSGKSSSDVSKDDAVRSAKSKKSKPLSELSGKALVSGEGSSKSKVGAKLDSLSEQASNRPRTPAEIQRQKLKKMMDELNEEGDGRTAPIVKLGDASMASPFTAKHASVAPTADIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMNLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLLFLISSVKEAEKYMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTAITSDLLRDLNDWLKLVPLPVGLRDKLLAWALLMFLCCYSWERLLRWMFPGKIPAWRKRQRMAVANLEKKEL 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2426183 2447445 + Sed0007652.1 Sed11g0274 728920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0274 1190 Pfam Cation transport ATPase (P-type) 540 618 - -
Sed11g0274 1190 SFLD C1.7: P-type atpase like 469 954 - -
Sed11g0274 1190 FunFam Cation-transporting ATPase 226 388 - -
Sed11g0274 1190 NCBIfam HAD-IC family P-type ATPase 777 828 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g0274 1190 NCBIfam HAD-IC family P-type ATPase 403 517 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g0274 1190 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1168 IPR023298 -
Sed11g0274 1190 Gene3D - 669 847 IPR023214 -
Sed11g0274 1190 SUPERFAMILY Calcium ATPase, transduction domain A 256 387 IPR008250 -
Sed11g0274 1190 Pfam E1-E2 ATPase 256 468 - -
Sed11g0274 1190 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Sed11g0274 1190 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Sed11g0274 1190 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Sed11g0274 1190 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Sed11g0274 1190 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166(InterPro)
Sed11g0274 1190 Gene3D - 483 668 IPR023299 GO:0000166(InterPro)
Sed11g0274 1190 CDD P-type_ATPase_cation 170 1106 IPR047820 -
Sed11g0274 1190 FunFam Cation-transporting ATPase 669 844 - -
Sed11g0274 1190 Coils Coil 895 915 - -
Sed11g0274 1190 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Sed11g0274 1190 MobiDBLite consensus disorder prediction 833 900 - -
Sed11g0274 1190 NCBIfam ATP13A2 family polyamine export P-type ATPase 41 1148 IPR006544 GO:0016020(InterPro)|GO:0140358(InterPro)
Sed11g0274 1190 Gene3D - 224 388 - -
Sed11g0274 1190 MobiDBLite consensus disorder prediction 880 898 - -
Sed11g0274 1190 FunFam Cation-transporting ATPase 484 668 - -
Sed11g0274 1190 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Sed11g0274 1190 MobiDBLite consensus disorder prediction 843 860 - -
Sed11g0274 1190 PANTHER CATION-TRANSPORTING ATPASE-RELATED 9 1173 IPR006544 GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0019829(PANTHER)|GO:0030176(PANTHER)|GO:0055085(PANTHER)|GO:0140358(InterPro)
Sed11g0274 1190 SUPERFAMILY HAD-like 483 833 IPR036412 -
Sed11g0274 1190 SFLD p-type atpase 469 954 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1659 Sed-Chr8:31714264 Sed11g0274 Sed-Chr11:2426183 0.00E+00 dispersed
Sed11g0274 Sed-Chr11:2426183 Sed08g1658 Sed-Chr8:31714264 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0274 K14950 - csv:101215828 2200.25