Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0309 ATGGCACTGGAAGCTGTTGTTTTTTCTCAAGATCCACTAAGCTACAATGGCAGCAAAGATCTCTACACTTTATTTGGAGGAGGAATTTGGGCAAATGGAACCTTTGAATATCCTCAAATCCCTCAAGATTTTCCCGAGAAACAAACAGAAAATTTCCCTTTCCCAGATTGGAGTTCTTCCTCCTCTGTTTTTGCCCCTGTTCTTTCCCCTGAAGCTGCCATTTCCAGAAATGGGTTGATCTTCAACGACCCGAATCCGCCATTGGAGCCCAAATCAAGAACTCCGAACCCGATTCGGCCGAGAAAGCGGCGACCGAAATCGAGGAAGAACAAGGAGGAAATTGAAAATCAGAGAATGACTCACATTGCTGTTGAGCGAAATAGGAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGATCTTTAATGCCAGATTCTTATGTTCAAAGGGGAGATCAAGCATCAATTATTGGGGGAGCAATTAATTTTGTGAAGGAGCTAGAACAGCAAGTTCAATTTCTCTCAACAGCACAAATGGAATCAAAAGGGAACAGTAATGTTTCAAAAGATGACTGTGATTCTTCAAATTCAAATTCTTCTTGTTCTTCTTCAGAAATCCCTTTCTCAGAGTTCTTCACATTCCCTCAGTTCAAATCAATGGAGGGTTGTTCTATGGAAAAAAATGAAACTCAAAACTCCTCCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGATCAAAGAGAAGGCCTAAACAGGTCTTGAAAATTGTTGCTGGCTTGCATTCACTTTCCCTCTCTGTTCTTCATCTCAATATCTCAACCATCAACCAAATTGCTCTTTACTGTCTAAGTGTGAAGGTTGAAGATGGTTGCAAGCTTACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAATTGCTTAGTAGAATAGAAGAAGATTCTCTTATGAACTGA 975 39.69 MALEAVVFSQDPLSYNGSKDLYTLFGGGIWANGTFEYPQIPQDFPEKQTENFPFPDWSSSSSVFAPVLSPEAAISRNGLIFNDPNPPLEPKSRTPNPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVQFLSTAQMESKGNSNVSKDDCDSSNSNSSCSSSEIPFSEFFTFPQFKSMEGCSMEKNETQNSSIADIEVTMVENHANLKIRSKRRPKQVLKIVAGLHSLSLSVLHLNISTINQIALYCLSVKVEDGCKLTSVDEIASALHQLLSRIEEDSLMN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2818125 2820042 - Sed0013157.1 Sed11g0309 728955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0309 324 Gene3D - 99 183 IPR036638 GO:0046983(InterPro)
Sed11g0309 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Sed11g0309 324 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Sed11g0309 324 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Sed11g0309 324 MobiDBLite consensus disorder prediction 179 204 - -
Sed11g0309 324 PANTHER MAX DIMERIZATION, MAD 3 316 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed11g0309 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 176 IPR036638 GO:0046983(InterPro)
Sed11g0309 324 MobiDBLite consensus disorder prediction 78 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1491 Sed-Chr2:50854112 Sed11g0309 Sed-Chr11:2818125 3.40E-39 dispersed
Sed02g1492 Sed-Chr2:50855331 Sed11g0309 Sed-Chr11:2818125 3.30E-39 dispersed
Sed04g0167 Sed-Chr4:1134490 Sed11g0309 Sed-Chr11:2818125 1.80E-52 dispersed
Sed05g0302 Sed-Chr5:1914558 Sed11g0309 Sed-Chr11:2818125 4.20E-49 dispersed
Sed05g0303 Sed-Chr5:1914558 Sed11g0309 Sed-Chr11:2818125 2.20E-39 dispersed
Sed05g2343 Sed-Chr5:35942968 Sed11g0309 Sed-Chr11:2818125 7.80E-53 dispersed
Sed05g2344 Sed-Chr5:35942968 Sed11g0309 Sed-Chr11:2818125 2.70E-42 dispersed
Sed07g0811 Sed-Chr7:5986806 Sed11g0309 Sed-Chr11:2818125 2.70E-17 dispersed
Sed11g0309 Sed-Chr11:2818125 Sed13g0085 Sed-Chr13:536482 3.10E-15 dispersed
Sed11g0309 Sed-Chr11:2818125 Sed08g1674 Sed-Chr8:31884736 6.80E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39894 PF00010 HLH 4.40E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0309 - - - 0.0