Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0391 ATGGGGCATTTCTCTACCATGTTCAATGGGTTGGCCAGGTCATTTTCCTTCAAGAAAGGTAGAAATTCTGGTAGTCTAGGCGACGAGGGAGGGCGAGAAGCTGCGAAAGCCATGGTAAAGGAAGCGAAAAGGAAAGACTCTATATTATGCACCTCTGGTGTCCTCAATGCAGAAGGTTCGGATAGCTTTGCTTCGGTGTTCTCGAAAAGAGGTGAAAAAGGAGTAAACCAAGATTGCTGCATTGTATGGGAAGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTTGATGGCCACGGACCATGGGGTCATTTTGTCGCGAAGACGGTAAGAAAATCAATGCCGCCATCTTTGCTGTATCACTGGCAGCAAGGACTTGCTCAAGCTTTTCTCGACCCAGAATCCAATTCGGAAAAGAAGCATCAGAGATTTGATATATGGAAGCATTCCTATTTAAGAGCTTGTGCTGTCATCGATCATGAACTCGCACAGCATCGGAAAATCGATACAGTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGTGAACTAGTCGTTTTGGCCAACGTTGGTGACTCTCGAGCCGTTTTGGCTACTACTTCAGATGATGGAAGTGTAGTACCAGTTCAGCTCACCATCGATTTCAAACCGAACCTACCTCAGGAGGCTGAGCGGATTACACAGAGTAATGGGAGGGTGTTTTGTTTAAACGACGAGCCTGGAGTTCACAGGGTCTGGCTCCCCAACGAGGAGTCGCCCGGATTGGCAATGTCGAGGGCATTTGGTGATTATTGCATTAAAGACTTTGGACTCATTTCTGTGCCTGAAGTAACATGTAGAAGCATAACCAAAAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTCTCCAACCAAGAAGCAGTGGAGATTGTCTCATCAACACCGGATAGAGCGAAATCAGCGAAACGTCTGGTCGAGTGTGCGGTTCGGGCATGGAAACGGAAGAGACGGGGCATTGCAATGGATGATATATCAGCTATCTGCCTCTTCTTCCACTCCTCATCAGGTCAAGGAGATCAATTTCTATCCATTCCATAG 1104 46.2 MGHFSTMFNGLARSFSFKKGRNSGSLGDEGGREAAKAMVKEAKRKDSILCTSGVLNAEGSDSFASVFSKRGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRKSMPPSLLYHWQQGLAQAFLDPESNSEKKHQRFDIWKHSYLRACAVIDHELAQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTIDFKPNLPQEAERITQSNGRVFCLNDEPGVHRVWLPNEESPGLAMSRAFGDYCIKDFGLISVPEVTCRSITKRDQFIILATDGVWDVVSNQEAVEIVSSTPDRAKSAKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSGQGDQFLSIP 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3739441 3741357 + Sed0001426.1 Sed11g0391 729037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0391 367 FunFam Probable protein phosphatase 2C 34 54 355 - -
Sed11g0391 367 Gene3D - 50 356 IPR036457 -
Sed11g0391 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Sed11g0391 367 SMART PP2C_4 52 351 IPR001932 -
Sed11g0391 367 PANTHER PROTEIN PHOSPHATASE 49 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed11g0391 367 SUPERFAMILY PP2C-like 62 354 IPR036457 -
Sed11g0391 367 CDD PP2Cc 63 353 IPR001932 -
Sed11g0391 367 Pfam Protein phosphatase 2C 81 330 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1940 Sed-Chr3:13478728 Sed11g0391 Sed-Chr11:3739441 2.30E-200 dispersed
Sed11g0391 Sed-Chr11:3739441 Sed11g1235 Sed-Chr11:28150901 2.30E-94 dispersed
Sed04g1773 Sed-Chr4:32365050 Sed11g0391 Sed-Chr11:3739441 1.20E-118 transposed
Sed11g0391 Sed-Chr11:3739441 Sed03g1939 Sed-Chr3:13478728 3.10E-200 wgd
Sed11g0391 Sed-Chr11:3739441 Sed04g0430 Sed-Chr4:3145711 2.10E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0391 - - - 0.0