Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0395 ATGGCGTCCAGGAACCGGACGTTCATTTTTAAGAAATACAGGGACGCGTTGAGGAGTGTGAGAGCTCCTACCAGCTCTTCGCCGGCATCGCCGTCGACTAGCTCCGGCGCTGGCGGTCCGGTGATTGAAATGGTTAGCTCCTCTTTGTTGCGTCCGAATCGGCCATACGCTCCTTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTCACCGTCGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATATCTGCAAATGTGCAGCGTTCACGAGTGAAAATGGTGGAGTTAGCTAAAGCTCATGCCAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATCGAGTCACTCTCGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCGTGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCTAAATGCAAATAGAACAAAAATGGAGGACGATGATTTAGAAGACATGGTATTTAATGAGCGTCAGATGGCCAAGCTCCGAAAGAGCGAAGCGTTCACCGCCGAAAGAGAGAAAGAGATCCAACAAGTTGTAGGATCTGTGAACGAGCTTGCTCAAATCATGAAGGATCTATCGGTACTTGTCATAGACCAGGGCACAATTATTGATAGAATTGATTACAATATTCAAAATGTTGCAACGACGGTTGACGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAAAACGCAGAAACAAGGAGGGATGGTAATGTGTGCAAGCGTTCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTGATCCTTAAAACCATACTATTTTGA 984 45.02 MASRNRTFIFKKYRDALRSVRAPTSSSPASPSTSSGAGGPVIEMVSSSLLRPNRPYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEISANVQRSRVKMVELAKAHAKALMPSFGDGKEDQRLIESLSQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEEVQDGIDIEMNLNANRTKMEDDDLEDMVFNERQMAKLRKSEAFTAEREKEIQQVVGSVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAEKTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3785915 3790544 + Sed0002838.1 Sed11g0395 729041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0395 327 PANTHER SYNTAXIN 89 311 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed11g0395 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed11g0395 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Sed11g0395 327 SMART tSNARE_6 226 293 IPR000727 -
Sed11g0395 327 SMART SynN_4 71 186 IPR006011 GO:0016020(InterPro)
Sed11g0395 327 CDD SNARE_syntaxin16 235 292 - -
Sed11g0395 327 MobiDBLite consensus disorder prediction 20 41 - -
Sed11g0395 327 FunFam Syntaxin-43 77 285 - -
Sed11g0395 327 Pfam SNARE domain 267 319 IPR000727 -
Sed11g0395 327 SUPERFAMILY t-snare proteins 76 286 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed11g0395 327 Gene3D - 77 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0550 Sed-Chr7:4193985 Sed11g0395 Sed-Chr11:3785915 2.50E-105 dispersed
Sed07g0551 Sed-Chr7:4193985 Sed11g0395 Sed-Chr11:3785915 1.10E-69 dispersed
Sed11g0395 Sed-Chr11:3785915 Sed11g0396 Sed-Chr11:3785915 4.40E-126 tandem
Sed11g0395 Sed-Chr11:3785915 Sed03g1942 Sed-Chr3:13505885 5.20E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0395 K08489 - csv:101207998 545.428