Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0396 ATGGCGTCCAGGAACCGGACGTTCATTTTTAAGAAATACAGGGACGCGTTGAGGAGTGTGAGAGCTCCTACCAGCTCTTCGCCGGCATCGCCGTCGACTAGCTCCGGCGCTGGCGGTCCGGTGATTGAAATGGTTAGCTCCTCTTTGTTGCGTCCGAATCGGCCATACGCTCCTTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTCACCGTCGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATATCTGCAAATGTGCAGCGTTCACGAGTGAAAATGGTGGAGTTAGCTAAAGCTCATGCCAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATCGAGTCACTCTCGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCGTGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCTAAATGCAAATAGAACAAAAATGGAGGACGATGATTTAGAAGACATGGTATTTAATGAGCGTCAGATGGCCAAGCTCCGAAAGAGCGAAGCGTTCACCGCCGAAAGAGAGAAAGAGATCCAACAAGTGAATACAAAACCACTTTCCCTACAATCTCCATTTTTGGATACATAA 777 45.43 MASRNRTFIFKKYRDALRSVRAPTSSSPASPSTSSGAGGPVIEMVSSSLLRPNRPYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEISANVQRSRVKMVELAKAHAKALMPSFGDGKEDQRLIESLSQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEEVQDGIDIEMNLNANRTKMEDDDLEDMVFNERQMAKLRKSEAFTAEREKEIQQVNTKPLSLQSPFLDT 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3785915 3790544 + Sed0002838.2 Sed11g0396 729042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0396 258 Gene3D - 77 257 - -
Sed11g0396 258 MobiDBLite consensus disorder prediction 18 47 - -
Sed11g0396 258 MobiDBLite consensus disorder prediction 231 258 - -
Sed11g0396 258 SMART SynN_4 71 186 IPR006011 GO:0016020(InterPro)
Sed11g0396 258 MobiDBLite consensus disorder prediction 244 258 - -
Sed11g0396 258 MobiDBLite consensus disorder prediction 20 41 - -
Sed11g0396 258 SUPERFAMILY t-snare proteins 75 246 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed11g0396 258 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1942 Sed-Chr3:13505885 Sed11g0396 Sed-Chr11:3785915 1.10E-116 dispersed
Sed03g1943 Sed-Chr3:13505885 Sed11g0396 Sed-Chr11:3785915 2.70E-121 dispersed
Sed11g0395 Sed-Chr11:3785915 Sed11g0396 Sed-Chr11:3785915 4.40E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0396 K08489 - csv:101207998 397.897