Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g0402 | ATGGCTAATTCCAGCAATACTGCAGCTGGAGTTGATAACACATTTAGAAGAAAATTTGACCGAGAGGAGTATTTGGAACGAGCTCGAGAACGTGAAAAACAGGATGTTGAGAAGGTTAAGTCCAAATTGAAGGGTCCACCAGTGCAAAGAAAGCCATTGAAACATAGAGATTATGAGGTAGACCTCGAGTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTAGCACCTCTAAGCCAGCAGGCTGGATACTTCTGTTCTGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAAAAACATCAGAGAGCCTTGGGTATGTCCATGCGTGTAGAACGGGCATCTCTTGAACAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAGTACCTGGAACCTTCACAGAGCAAGATCTTGACGAGCGTATATTGAAGCAGCAACAAGAAGAAGAACAACGGAAGCACGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGACATTGCGGCAATGATGGGATTTGGGGGCTTCGGTTCATCGAAGAAGTGA | 609 | 44.17 | MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEEEPEVDPDIAAMMGFGGFGSSKK | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3878979 | 3882813 | + | Sed0001365.1 | Sed11g0402 | 729048 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g0402 | 202 | Gene3D | Classic Zinc Finger | 78 | 116 | - | - | |
| Sed11g0402 | 202 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed11g0402 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 125 | IPR036236 | - | |
| Sed11g0402 | 202 | FunFam | zinc finger matrin-type protein 2-like | 78 | 116 | - | - | |
| Sed11g0402 | 202 | MobiDBLite | consensus disorder prediction | 26 | 54 | - | - | |
| Sed11g0402 | 202 | Coils | Coil | 152 | 181 | - | - | |
| Sed11g0402 | 202 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 8 | 202 | IPR040107 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER) | |
| Sed11g0402 | 202 | MobiDBLite | consensus disorder prediction | 151 | 202 | - | - | |
| Sed11g0402 | 202 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | IPR013087 | - | |
| Sed11g0402 | 202 | MobiDBLite | consensus disorder prediction | 151 | 183 | - | - | |
| Sed11g0402 | 202 | Coils | Coil | 116 | 136 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g0402 | K12848 | - | csv:101206387 | 322.783 |