Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0410 ATGTGTTGCCAAGCTCTCCTTTTGGTCCAAAAAATCTCAGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAACCCTCCAAAGATGTCAACTTCCTCTTCTCTCAACTCGTCCTCACGTGCACCGTTCCGCCCCCGTCTCCACCACCCATCGATGTCTCCAAGCTCTGCTCCAACATCCAAACCATGAGGTCCCATCTCATCAAGCTCTGTGGAGAAGCTGAGTCCCTCCTCGAGCACCATTACTCCACCATATTAGCTTCCCACCAAAACCCTACTCACCATCTCTCCATTTTCCCTTACTATTCCAACTACCTCAAGCTAACCCACCTTGAGTTCTCCATTTTGACAAACCACGCGCCCCATGCACCTCCATCCAAGGTCGCATTTGTCGGCTCCGGCCCGCTTCCACTCTCGTCCATAATCATGGCCTCTAAGTACCTACCAACGACCGAGTTTCACAACTTCGACATCGACCTATCTGCCAACGCCAAGGCTGCGTCACTAGTGGCAAGCGACGCTGACTTGTCGAGACGAATGGTGTTCCACACCATGGACATCATGGAAACCACCTCGAACGAGCTGAGCTCGTTCGAGGTGGTGTTTTTGGCGGCGTTGGTGGGGATGGATAGAGAGGAGAAGGTGAAGGTGATAGAGCATTTAAAGAAGAACATGGCGGGCGGCGCGTTGCTGATGTTGAGGAGCGCGTACGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACAGTGTTTCATCCTACGGATGAAGTTATAAACTCAATTGTGTTGGCCAGATTATAA 834 50.84 MCCQALLLVQKISELYHKISTLESLKPSKDVNFLFSQLVLTCTVPPPSPPPIDVSKLCSNIQTMRSHLIKLCGEAESLLEHHYSTILASHQNPTHHLSIFPYYSNYLKLTHLEFSILTNHAPHAPPSKVAFVGSGPLPLSSIIMASKYLPTTEFHNFDIDLSANAKAASLVASDADLSRRMVFHTMDIMETTSNELSSFEVVFLAALVGMDREEKVKVIEHLKKNMAGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3960990 3961859 + Sed0009008.1 Sed11g0410 729056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0410 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 237 IPR029063 -
Sed11g0410 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed11g0410 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed11g0410 277 PANTHER NICOTIANAMINE SYNTHASE 3 6 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed11g0410 277 Gene3D Vaccinia Virus protein VP39 3 277 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0410 Sed-Chr11:3960990 Sed11g0754 Sed-Chr11:12544006 2.10E-68 dispersed
Sed11g0410 Sed-Chr11:3960990 Sed03g1966 Sed-Chr3:13667117 3.20E-85 wgd
Sed11g0410 Sed-Chr11:3960990 Sed04g0413 Sed-Chr4:3026762 5.00E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0410 K05953 - csv:101219339 430.639