Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0411 ATGGAAGAGTTTTATAACAGCTCTGTTATATCCACATACACTAATGGTGGATTCCATGGAGCTCACATGGTGGGTGGTGAAATGCTTCAGCTTGAAGCTGAGTCCACAACTGGAGTTAACATGTCTGACATGATCAAGGCTCAAATTGCCAACCATCCCCTTTATCCCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTTCACCACAAATGGCTTCTCTGCTTGAGCAAATTGGTCTTGAAAATCACAATCCTAGGTCTTGTATTGAGCTGGGAGCTGATCCTCAACTGGACAACTTTATGGAGTCATACTGTGAAGTTCTTCATCAATATAAAAATGAGCTATCCAAGCCATTTGATGAAGCAGCAGTGTTCTTGACCAACATTAAATTGGAGCTAAGCAACCTGTGTAAAGGATCATTTACTGCAACATTCGATTCTCGCTCCGTTATGAATGATGAAGTAGCTGGGACCCTGGAGGAAGAACCGAGCAGCTATGGCGAGATGGAAATGCCGGGAAATCGCGAGTCATTGTGCACGAGGCAAACAAATCAAGACCTCAAAGAAATGTTACTTAAGAAATACAGTGGCTATGTCAGCAATTTGAAGAAGGAATTCTTGAAAAAAAGGAAGAAGGAGAAGCTGCCTAAGGATGCAAGGATGACTCTATTTGAATGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGGAAAAATCAAAACTTTCTGATATCACTGGTTTGGAACAAAAGCAGATCAATAACTGGTTCATTAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATTCGGTTTGCCCTCATGGCCGGGGCAGGAGAAGAGGAATGTATCAAATGA 876 42.47 MEEFYNSSVISTYTNGGFHGAHMVGGEMLQLEAESTTGVNMSDMIKAQIANHPLYPKLVSAYIECQKVGASPQMASLLEQIGLENHNPRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAVFLTNIKLELSNLCKGSFTATFDSRSVMNDEVAGTLEEEPSSYGEMEMPGNRESLCTRQTNQDLKEMLLKKYSGYVSNLKKEFLKKRKKEKLPKDARMTLFEWWNTHYKWPYPTEEEKSKLSDITGLEQKQINNWFINQRKRHWKPPEDIRFALMAGAGEEECIK 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3964584 3969329 - Sed0005255.1 Sed11g0411 729057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0411 291 SMART KNOX1_2 43 87 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0411 291 Pfam KNOX1 domain 45 86 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0411 291 Pfam ELK domain 189 210 IPR005539 GO:0003677(InterPro)
Sed11g0411 291 ProSitePatterns 'Homeobox' domain signature. 247 270 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed11g0411 291 CDD homeodomain 221 272 IPR001356 GO:0003677(InterPro)
Sed11g0411 291 SMART KNOX2_2 90 141 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0411 291 Gene3D - 206 277 - -
Sed11g0411 291 SMART HOX_1 211 276 IPR001356 GO:0003677(InterPro)
Sed11g0411 291 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677(InterPro)
Sed11g0411 291 SUPERFAMILY Homeodomain-like 211 275 IPR009057 -
Sed11g0411 291 Pfam KNOX2 domain 94 140 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0411 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 279 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed11g0411 291 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g0411 291 SMART ELK_2 189 210 IPR005539 GO:0003677(InterPro)
Sed11g0411 291 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1969 Sed-Chr3:13692692 Sed11g0411 Sed-Chr11:3964584 6.00E-105 dispersed
Sed11g0411 Sed-Chr11:3964584 Sed14g1325 Sed-Chr14:22133290 8.40E-60 dispersed
Sed11g0411 Sed-Chr11:3964584 Sed03g1968 Sed-Chr3:13692692 4.60E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39897 PF03791 KNOX2 1.70E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0411 - - - 0.0