Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0411 | ATGGAAGAGTTTTATAACAGCTCTGTTATATCCACATACACTAATGGTGGATTCCATGGAGCTCACATGGTGGGTGGTGAAATGCTTCAGCTTGAAGCTGAGTCCACAACTGGAGTTAACATGTCTGACATGATCAAGGCTCAAATTGCCAACCATCCCCTTTATCCCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTTCACCACAAATGGCTTCTCTGCTTGAGCAAATTGGTCTTGAAAATCACAATCCTAGGTCTTGTATTGAGCTGGGAGCTGATCCTCAACTGGACAACTTTATGGAGTCATACTGTGAAGTTCTTCATCAATATAAAAATGAGCTATCCAAGCCATTTGATGAAGCAGCAGTGTTCTTGACCAACATTAAATTGGAGCTAAGCAACCTGTGTAAAGGATCATTTACTGCAACATTCGATTCTCGCTCCGTTATGAATGATGAAGTAGCTGGGACCCTGGAGGAAGAACCGAGCAGCTATGGCGAGATGGAAATGCCGGGAAATCGCGAGTCATTGTGCACGAGGCAAACAAATCAAGACCTCAAAGAAATGTTACTTAAGAAATACAGTGGCTATGTCAGCAATTTGAAGAAGGAATTCTTGAAAAAAAGGAAGAAGGAGAAGCTGCCTAAGGATGCAAGGATGACTCTATTTGAATGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGGAAAAATCAAAACTTTCTGATATCACTGGTTTGGAACAAAAGCAGATCAATAACTGGTTCATTAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATTCGGTTTGCCCTCATGGCCGGGGCAGGAGAAGAGGAATGTATCAAATGA | 876 | 42.47 | MEEFYNSSVISTYTNGGFHGAHMVGGEMLQLEAESTTGVNMSDMIKAQIANHPLYPKLVSAYIECQKVGASPQMASLLEQIGLENHNPRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAVFLTNIKLELSNLCKGSFTATFDSRSVMNDEVAGTLEEEPSSYGEMEMPGNRESLCTRQTNQDLKEMLLKKYSGYVSNLKKEFLKKRKKEKLPKDARMTLFEWWNTHYKWPYPTEEEKSKLSDITGLEQKQINNWFINQRKRHWKPPEDIRFALMAGAGEEECIK | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3964584 | 3969329 | - | Sed0005255.1 | Sed11g0411 | 729057 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0411 | 291 | SMART | KNOX1_2 | 43 | 87 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0411 | 291 | Pfam | KNOX1 domain | 45 | 86 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0411 | 291 | Pfam | ELK domain | 189 | 210 | IPR005539 | GO:0003677(InterPro) | |
Sed11g0411 | 291 | ProSitePatterns | 'Homeobox' domain signature. | 247 | 270 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed11g0411 | 291 | CDD | homeodomain | 221 | 272 | IPR001356 | GO:0003677(InterPro) | |
Sed11g0411 | 291 | SMART | KNOX2_2 | 90 | 141 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0411 | 291 | Gene3D | - | 206 | 277 | - | - | |
Sed11g0411 | 291 | SMART | HOX_1 | 211 | 276 | IPR001356 | GO:0003677(InterPro) | |
Sed11g0411 | 291 | ProSiteProfiles | 'Homeobox' domain profile. | 209 | 272 | IPR001356 | GO:0003677(InterPro) | |
Sed11g0411 | 291 | SUPERFAMILY | Homeodomain-like | 211 | 275 | IPR009057 | - | |
Sed11g0411 | 291 | Pfam | KNOX2 domain | 94 | 140 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0411 | 291 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 42 | 279 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed11g0411 | 291 | Pfam | Homeobox KN domain | 229 | 268 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed11g0411 | 291 | SMART | ELK_2 | 189 | 210 | IPR005539 | GO:0003677(InterPro) | |
Sed11g0411 | 291 | ProSiteProfiles | ELK domain profile. | 189 | 209 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1969 | Sed-Chr3:13692692 | Sed11g0411 | Sed-Chr11:3964584 | 6.00E-105 | dispersed | |
Sed11g0411 | Sed-Chr11:3964584 | Sed14g1325 | Sed-Chr14:22133290 | 8.40E-60 | dispersed | |
Sed11g0411 | Sed-Chr11:3964584 | Sed03g1968 | Sed-Chr3:13692692 | 4.60E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39897 | PF03791 | KNOX2 | 1.70E-19 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0411 | - | - | - | 0.0 |