Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0465 ATGTTTGATTGTGGTAACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTAAGGTTGGATGACTTGGACTCTAGATTATCATCGCCGGCTGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAGCCGTGCAGTCCATGGAAATGATAAGCCATCTGGATCCTTCAAGAAAGGAATGAGAAAAGGGTCTGAAGGACTTAAATCAATCGGTCGATCACTCAAGTTTGGGGTTTCTCGACCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAGATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTTAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCTGTGGACCCATTATTCTTTTATGTTCCTGTCATCAACCAAACCTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATTGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCCGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTATTCAGAGGTCAAAAGGTTCAGATGTATATGTAACAAAACAGGCCCTTCTCTTAATTGTATTCCTTCAATACATCCCAAGATTTCTTAGAGCGATCCCCTTGACTTCAGAATTGAAAAGGACAACTGGCGTATTTGCGGAAACTGCCTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTTTGGTACTTATTAGCTGTGGATCGCAATGATACATGTTGGCAGAAGTATTGTAGTGCCCCAATTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGGCATGGCAGGTTATGCAGCTTGGAACAAGACAGATGTGGCTGCCCTTGTGTCAAAATGCAAACCTGCTGATGATAATGATCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGCATTGCCGCTACTAAGAATTTTGTCGCCAAATATTGTTACTGTCTATGGTGGGGGCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTAAAACAAGCACGTTTCCGGGTGAAGTGATATTTTCTATAGGATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGGAACATGCAGACATATCTTCAATCTCTAACGATAAGGCTCGAGGAAATGAGGGTGAAAAAGCGTGATTCGGAGCAGTGGATGCACCATCGCTTGCTGCCGCAGGAACTTCGGGAGAGAGTCAGGCGTTATGATCAATACAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAAGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACAGAGCACACTTACATAGTCCGTGAAGGCGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACGGATGGTGGGCGGAGTGGATTTTTCAATCGTACCTTTCTGAAAGAAGATGACTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCAAAATCTGGTGCAAATCTTCCATCTTCTACAAGGACAGTAAATGCTATTACAGAGGTTGAGGCCTTTGCTCTTGTTGCTGAAGAGTTGAAATTCGTGGCCAGTCAATTCAGGCGCCTTCACAGTAGGCAGGTGCAACATACATTCCGATTCTACTCGCAGCAATGGAGAGCCTGGGCTGCTTGCTTCATCCAAGCAGCGTGGCGTCGGTATTCGAAGAGAAAGACAATGGAACTTCGTCAAAAGGAAGACGCTGCAGCCGAAGAATCTGAGGCATCTCAAACTACCACAAGCAGAGGCTCTTACAGTATTCGTGCAACTTTTTTAGCTTCCAAATTTGCTGCCAATGCTCTTCGGGGCGTTCAGCGATATCGCGAGGCAAAGAGCGCTCAGGAATTGATAAAGCTGCAGAAGCCCCCAGAGCCAGATTTTACTGCTGATGATGCTGATTGA 2205 43.63 MFDCGNKSQLMGGQREKFVRLDDLDSRLSSPADSGMRRCGFNIDGFSRAVHGNDKPSGSFKKGMRKGSEGLKSIGRSLKFGVSRPVFPEDLKESKKKIFDPQDKLLLFFNKLFVISCILAISVDPLFFYVPVINQTSNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFIQRSKGSDVYVTKQALLLIVFLQYIPRFLRAIPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVDRNDTCWQKYCSAPICRKDFLYCGNQGMAGYAAWNKTDVAALVSKCKPADDNDQFDFGIFQQALSSGIAATKNFVAKYCYCLWWGLQNLSTLGQGLKTSTFPGEVIFSIGLAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEHTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEDDFCGEELLTWALDPKSGANLPSSTRTVNAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRAWAACFIQAAWRRYSKRKTMELRQKEDAAAEESEASQTTTSRGSYSIRATFLASKFAANALRGVQRYREAKSAQELIKLQKPPEPDFTADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4316016 4335778 - Sed0017711.1 Sed11g0465 729111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0465 734 Pfam Ion transport protein 109 431 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed11g0465 734 MobiDBLite consensus disorder prediction 715 734 - -
Sed11g0465 734 Pfam Cyclic nucleotide-binding domain 526 615 IPR000595 -
Sed11g0465 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 722 - -
Sed11g0465 734 SMART cnmp_10 505 636 IPR000595 -
Sed11g0465 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Sed11g0465 734 Gene3D Jelly Rolls 503 623 IPR014710 -
Sed11g0465 734 Gene3D Helix hairpin bin 433 496 - -
Sed11g0465 734 CDD CAP_ED 505 636 IPR000595 -
Sed11g0465 734 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Sed11g0465 734 Gene3D - 109 430 - -
Sed11g0465 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed11g0465 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed11g0465 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed11g0465 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed11g0465 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed11g0465 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed11g0465 734 ProSiteProfiles IQ motif profile. 641 670 - -
Sed11g0465 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 587 IPR000595 -
Sed11g0465 734 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Sed11g0465 734 SUPERFAMILY cAMP-binding domain-like 435 624 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0465 Sed-Chr11:4316016 Sed13g2104 Sed-Chr13:25724430 6.50E-202 dispersed
Sed06g0593 Sed-Chr6:5238145 Sed11g0465 Sed-Chr11:4316016 3.20E-302 transposed
Sed11g0465 Sed-Chr11:4316016 Sed03g2909 Sed-Chr3:46224097 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0465 K05391 - csv:101219180 1342.79