Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0506 ATGGGTTTGGTTGAAGAATACATGCCTGCAATGGCAATGTTTGCAATTCAAGTGATTTATGCAGTTATGACCCTAACCTCAAGGGCTGCCCTCTTGGAGGGCATGAGCCCTAGAGTCTTTGTGGTTTATAGGCAGGCCATTGCCACTCTCTTTATTGCTCCCATTGCTTATTTTTCCAGATCCAAATCCATGAGGCTACCTTTGAATTTGAAGAGCTTTTCCCTCATCTTCGTTGCTGCTCTCGTCGGTGCAACAATAAACCTCAATTTTTACTTTGAAGGAGTTTTTCTAGCCTCCTCTTCTATAGCGACCGCGATGGAAAATCTAGTTCCCGCGATTACGTTTGTGATAGCAGCAATCATCGGACTCGAGAGAGTAGATATTAAAAGTTTGAGGAGCATTGCAAAGATTGGAGGGACAGTGGTTTGTGTGATTGGGGCCATGTGCATGGCCTTTCTTAGAGGTCCAAAGCTTCTGAATATTACAACACAAAACTTTGGGTTGAAATCTGCATTATTTGGTTTTGAAAGTGGAAGTGATGAGGCTTGGTTATTGGGTTGCTTGTGTCTCTTTGTGAACTGTTTTTGCTGGTCACTTTGGATAATTTTGCAGGTACCCGCGATAGCCAGCCATCCGGACAAGCTATCTTTATCAGCATGGATGTGTTTCTTTTCCCTAATACAATCTGCTATTTTCACTCTACTAGTAGAAGGACCCAATCTAGAAATATGGAAAATACATTCAAGAACTGAAGTTATTTGTTACCTCTTCTCAGGAATTTTTGCCTCAGGTGTTGCCTACTTTCTTCAAGCTTGGAGTATTTCAAAAAGAGGCCCTGTCTTCTCTGCAGCATTTAATCCTCTTTGCAGCATTATTACAACTATTTTGGCAGCAATATTTCTTCATGAAGACATTTATGTAGAAAGGTAA 930 41.18 MGLVEEYMPAMAMFAIQVIYAVMTLTSRAALLEGMSPRVFVVYRQAIATLFIAPIAYFSRSKSMRLPLNLKSFSLIFVAALVGATINLNFYFEGVFLASSSIATAMENLVPAITFVIAAIIGLERVDIKSLRSIAKIGGTVVCVIGAMCMAFLRGPKLLNITTQNFGLKSALFGFESGSDEAWLLGCLCLFVNCFCWSLWIILQVPAIASHPDKLSLSAWMCFFSLIQSAIFTLLVEGPNLEIWKIHSRTEVICYLFSGIFASGVAYFLQAWSISKRGPVFSAAFNPLCSIITTILAAIFLHEDIYVER 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4818044 4821681 - Sed0004981.2 Sed11g0506 729152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0506 309 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
Sed11g0506 309 PANTHER WAT1-RELATED PROTEIN 11 307 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed11g0506 309 Pfam EamA-like transporter family 11 142 IPR000620 GO:0016020(InterPro)
Sed11g0506 309 Pfam EamA-like transporter family 185 305 IPR000620 GO:0016020(InterPro)
Sed11g0506 309 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0506 Sed-Chr11:4818044 Sed11g0509 Sed-Chr11:4932194 1.30E-122 dispersed
Sed11g0505 Sed-Chr11:4816732 Sed11g0506 Sed-Chr11:4818044 9.10E-168 tandem
Sed11g0506 Sed-Chr11:4818044 Sed11g0507 Sed-Chr11:4834483 5.40E-150 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0506 - - - 0.0