Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0508 ATGGGTTTTGTTGAAAAATACTTGCCATTAATTGCAATGCTTGGGATTCAAGTGCCCTACGCCATTATGGCTCTTGTTGCTCGAGCTGCCCTCTTGAAGGGCATGAGCCCTAGAGTGTTTTCTGTTTATAGGCATGCCATTGCCACTCTTTTCCTTGCACCCATTGCTTATTTCTCAAGGTCCAAATCCAAGAGACTGTCTTTGGATCTGAAGAGCTTTTTCCTCATCTTTCTCTTAGGATTCATCGGAATAACAATAAACCAAAATCTCTACTTTGAGGGAGTTTTCTTAGCCACCTCGTCAATGGCGACTGCGATGGGGAATCTCGTACCGGCAGTGACGTTTGTGATCGCGATAGTTTTACGATTAGAACGAGTTCAGATGAGAAATTTGAGGAGCATAGCAAAGATAGGAGGGACAGTGGCTTGTTTAAGTGGGGCCATGTGCATGGCCCTTCTTAGGGGTCCAAAGCTTCTAAATAATACAACACATAGTGAGGTGAAATCAACATTATTTGGTTTGGCAAGTGGAAATGATCAAGCTTGGTTATTGGGTTGCTTGTGTCTCTTTGGAAGCTGTTTTTGTTGGTCAATTTGGTTGATTTTGCAGGTTCCAGCTTCAACCAGCTATCCAGATAACTTAGCATTAACAGCATGGATGTGTTTCTTTGCCACAATTCAATCCTTCATTGTTACTCTTTTCTTAGAGCCAATCAATATTCAAACATGGACACCACATTCAAGAATTGAAGTTTTTTGTTATTTTTTCTCGGGAATGGTTGGGTCAGGGTTTAACTTCTTTGTTCAAAGTTGGTGTGTTTCAAAAAGAGGCCCTGTCTTCACTGGAATGTTCAATCCTCTTTGCACCATTATTACAACCATTATGGCAGCTTTGTTTCTTCATGAGGAAATTTATACTGGAAGTTTGTTGGGGGGTGTTGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCACATGACTATGTGAAAGAAGAAAGCACAAAAGAGCATAGTATTGAATCATCCTCAGTTGATACAAGCAGCCATAAAATTGATTTGGAAGAACCTCTTTTATCTAAAGAGGATGTATAA 1098 40.16 MGFVEKYLPLIAMLGIQVPYAIMALVARAALLKGMSPRVFSVYRHAIATLFLAPIAYFSRSKSKRLSLDLKSFFLIFLLGFIGITINQNLYFEGVFLATSSMATAMGNLVPAVTFVIAIVLRLERVQMRNLRSIAKIGGTVACLSGAMCMALLRGPKLLNNTTHSEVKSTLFGLASGNDQAWLLGCLCLFGSCFCWSIWLILQVPASTSYPDNLALTAWMCFFATIQSFIVTLFLEPINIQTWTPHSRIEVFCYFFSGMVGSGFNFFVQSWCVSKRGPVFTGMFNPLCTIITTIMAALFLHEEIYTGSLLGGVAVIIGLYIVLWGKAHDYVKEESTKEHSIESSSVDTSSHKIDLEEPLLSKEDV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4899445 4904372 - Sed0020069.1 Sed11g0508 729154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0508 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 327 - -
Sed11g0508 365 MobiDBLite consensus disorder prediction 337 365 - -
Sed11g0508 365 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
Sed11g0508 365 Pfam EamA-like transporter family 11 134 IPR000620 GO:0016020(InterPro)
Sed11g0508 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 142 - -
Sed11g0508 365 PANTHER WAT1-RELATED PROTEIN 11 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1722 Sed-Chr3:11247621 Sed11g0508 Sed-Chr11:4899445 9.90E-64 dispersed
Sed11g0508 Sed-Chr11:4899445 Sed12g2251 Sed-Chr12:32881719 6.10E-84 dispersed
Sed11g0507 Sed-Chr11:4834483 Sed11g0508 Sed-Chr11:4899445 8.80E-131 tandem
Sed11g0508 Sed-Chr11:4899445 Sed11g0509 Sed-Chr11:4932194 7.60E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0508 - - - 0.0