Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0509 ATGGGATTTGTTGAAGAAAACTTGCCAGCAATGGCGATGTTTGGGCTTCAAGTGTCCTACGCCATAATGGCTCTCATCTCCCGAGCTGCCCTTTTGAAGGGCATGAGCCCTAGAGTCTTTGTTGTTTATAGGCAGGCCATTGCCACTCTTTTTATTGCACCCATTGCATATTTCTCAAGGTCCAAATCCAGGAGGGTGTCTTTGGATTTCAAGAGCTTTTCTTTGATCTTTATCACTGCTCTTGTCGGTGTGACCATGAACCAAAATGCTTACTCTGAGGGAATTTTCTTAGCAACCTCGTCGATGGCGACAGCAATGACGAATCTAATTCCAGCAGTGACGTTTGTGATAGCAATAATTTTTGGAATGGAAAGAGTGGGGGTGAGAAGCTTGAGGAGCATGGCAAAAATTGGAGGGACAGTGATTTGTGTTAGTGGGGCCATGTGCATGGCCCTTCTTAGGGGCCCAAAGCTTCTAAATAATACAATACAAGGCTTTGAGGTTAAGTCTACATTATTTGGTTTGGAAAGTGGAAGTGATCAAGCTTGGTTATTGGGTTGCTTGTGTCTCTTTGGAAGCTGTTGTTCTTGGTCAATTTGGTTGATTTTGCAGGTACCAGTATCAGCCAGCTATCCAGATAATTTATCATTAACAGCATGGATGTGTTTCTTTGCCACAATTCAATCCTTCATTGTTACTATTTTCTTAGAGCCAATCAATATTCAAACATGGACACCACATTCAAGAATTGAAGTTATTTGTTATCTATTTTCTGGAATTTTTTGCTCAGGTGTTGCCTTTTTTGTTCAAGCTTGGTGTATTTCAAAAAGAGGCCCTGTGTTTTCTGCTATGTTCAACCCTGCTTGCACCATTGTTACAACTATTTTGGCAGCTTTGTTTCTGGATGAGGAGATTTATACTGGAAGCTTGTTGGGGGGCATTGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCACATGACTATGTGAAGGATGAAAGCACAGAAAAGCATAGTGTTGAATCATCCTCTGTTGAGACAAACAGCTCATGTGCAATTATTGTCTTGGAAGAACCTCTCTTGTCTAAACCATGTCATGTGCATCATAGTGACAACTAG 1125 41.16 MGFVEENLPAMAMFGLQVSYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLDFKSFSLIFITALVGVTMNQNAYSEGIFLATSSMATAMTNLIPAVTFVIAIIFGMERVGVRSLRSMAKIGGTVICVSGAMCMALLRGPKLLNNTIQGFEVKSTLFGLESGSDQAWLLGCLCLFGSCCSWSIWLILQVPVSASYPDNLSLTAWMCFFATIQSFIVTIFLEPINIQTWTPHSRIEVICYLFSGIFCSGVAFFVQAWCISKRGPVFSAMFNPACTIVTTILAALFLDEEIYTGSLLGGIAVIIGLYIVLWGKAHDYVKDESTEKHSVESSSVETNSSCAIIVLEEPLLSKPCHVHHSDN 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4932194 4937275 - Sed0013548.1 Sed11g0509 729155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0509 374 PANTHER WAT1-RELATED PROTEIN 11 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed11g0509 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 144 - -
Sed11g0509 374 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Sed11g0509 374 Pfam EamA-like transporter family 11 135 IPR000620 GO:0016020(InterPro)
Sed11g0509 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0506 Sed-Chr11:4818044 Sed11g0509 Sed-Chr11:4932194 1.30E-122 dispersed
Sed11g0507 Sed-Chr11:4834483 Sed11g0509 Sed-Chr11:4932194 6.10E-140 dispersed
Sed11g0509 Sed-Chr11:4932194 Sed12g2251 Sed-Chr12:32881719 1.50E-90 dispersed
Sed11g0508 Sed-Chr11:4899445 Sed11g0509 Sed-Chr11:4932194 7.60E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0509 - - - 0.0