Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0511 ATGGAACCCCAAATTCAAAACGACCAAGATTTCATCTTCCGATCCAAACTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTACTGCTTCCAAAACCTCTCCCGACTCCGCCACCGCCCCTGCCTGATCGACGCCGACACCGGCAAGGTCCACACCTATGCCGATGTCGACGTCTCAGCCCGGCGCATCGCCGCCGGGCTGAACAAAATAAACATCAAACAAGGCGACGTCATCATGCTCCTCCTACCCAACAGTGTGGAGTTCGTGTTGGCGTTCCTGGGGGCATCGCACCTCGGCGCCATCACGACCACCGCGAACCCGCGGTACACGGGCGAGGAGATCGGGAAGCAGTTGGGGGTGTCGAGGCCGAAGGCGATTGTGACGGAGGCGGGGTGCGTGGAGAAGGTTTGGGGATATGCCGAGGAGCATGGGGTGAGGGTATTGTGCACGGACTCGGCGGGTTGTTTGCGATTTAGGGAGCTCTTGGCGGCGGAGGAGGGTGAGATTCCGGCGGTGAAGATTAAGGGGGATGATGTTGTGGCGGTTCCCTTCTCGTCGGGAACTACTGGAATTCCTAAAGGCGTTATGCTTACGCATAAATCTCTTGTCACAAGCGTTGCTCAACAGGTGGACGGAGAGAATCCAAATGTAAATTTAAACAGAAATGACGTCATAATTTGTGTTCTTCCATTATTCCACATCTACTCTCTCAACTCTGTTCTCCTTTGTGGACTACGTGTCGGTGCCACCATATTGATTATAAAAAAGTACGACATGTCGTCTCTGCTCGGCCTCATTCAGACCCATAAGGCCACCGTAGCCCCCTTCGTCCCTCCCATCGTCATGGACTTTGCTAAGAATCCAAACCTCCACTGTTACGACTTGTCGTCCATCCGCATCGTCATGTCGGGCGCTGCCCCCATGGGCAAGGACCTCGAGAACGCCATTAAGGCCAAGCTCCCCAATGCCACATTCGGACAGGGTTACGGAATGACAGAGGCAGGGCCGGTGCTATCAATGAGTTTGGCGTTTGCGAAAGAACCCTCTGAGGTGAAATCAGGTGCGTGCGGGACCATCGTAAGAAATGCTGAGATGAAGATCGTCCAACCTCTAACCACTCTTTCCTTGCCACGTAATCAGCCTGGTGAGATCTGCATACGTGGCTGCCAGATCATGAAAGGTTACCTTAACAACCAAGAAGCAACAGAGAAGACGATAGACAAAGACGGGTGGCTCCACACGGGCGACTTAGGGTTCATCGACGACGATGACGAGATCTTCATCGTCGATCGATTGAAAGAACTGATTAAATACAAAGGATACCAAGTGGCGCCAGCAGAGCTTGAAGCTCTCTTGATTTCAAACCCCAACATTTCTGCTGCTGCTGTCATACCTATGAAAAATGAAGAAGCTGGAGAGATTCCTGTTGCATTTGTTGTTAAATCTAAAGGTTCCAAGATTAGTGAGGATGAAATCAAAAAGTATATTTCAGATCAGGTGATATATTACAAAAAGATTAGAAAGGTTATATTTTTGGATTCAATTCCAATTGCTCCTTCAGGCAAGATTTTGAGGAAAAATTTGAAAGCACAACTAGAAGCTGGTGCCTTCTAA 1623 50.28 MEPQIQNDQDFIFRSKLPDIYIPNHLPLHTYCFQNLSRLRHRPCLIDADTGKVHTYADVDVSARRIAAGLNKINIKQGDVIMLLLPNSVEFVLAFLGASHLGAITTTANPRYTGEEIGKQLGVSRPKAIVTEAGCVEKVWGYAEEHGVRVLCTDSAGCLRFRELLAAEEGEIPAVKIKGDDVVAVPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNRNDVIICVLPLFHIYSLNSVLLCGLRVGATILIIKKYDMSSLLGLIQTHKATVAPFVPPIVMDFAKNPNLHCYDLSSIRIVMSGAAPMGKDLENAIKAKLPNATFGQGYGMTEAGPVLSMSLAFAKEPSEVKSGACGTIVRNAEMKIVQPLTTLSLPRNQPGEICIRGCQIMKGYLNNQEATEKTIDKDGWLHTGDLGFIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLISNPNISAAAVIPMKNEEAGEIPVAFVVKSKGSKISEDEIKKYISDQVIYYKKIRKVIFLDSIPIAPSGKILRKNLKAQLEAGAF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4996873 5004586 + Sed0017693.1 Sed11g0511 729157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0511 540 CDD 4CL 22 531 - -
Sed11g0511 540 Gene3D - 4 435 IPR042099 -
Sed11g0511 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 532 - GO:0016405(PANTHER)
Sed11g0511 540 Gene3D - 436 538 IPR045851 -
Sed11g0511 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 436 - -
Sed11g0511 540 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Sed11g0511 540 Pfam AMP-binding enzyme 36 399 IPR000873 -
Sed11g0511 540 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Sed11g0511 540 FunFam 4-coumarate--CoA ligase 2 437 538 - -
Sed11g0511 540 SUPERFAMILY Acetyl-CoA synthetase-like 12 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0511 Sed-Chr11:4996873 Sed12g2223 Sed-Chr12:32627305 5.50E-198 dispersed
Sed11g0511 Sed-Chr11:4996873 Sed04g2599 Sed-Chr4:38469866 3.80E-199 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0511 K01904 - csv:101210868 840.106