Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g0557 | ATGGCAAGCGACACGTTGACTCTCGAGGGGATCAAGAACGAGACTGTTGATCTGGAGAAAATCCCCATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTATCATCTCAAGAAGGGGTGAACCGTCTTCAAATCTTTGGCCCCAACAAGCTAGAAGAGAAGAAGGAAAGCAAGATTCTGAAGTTTCTTGGTTTTATGTGGAATCCCCTTTCATGGGTCATGGAAGCTGCAGCCATCATGGCCATTGCCTTGGCGAACGGCGGCGGTCGAGGACCGGATTGGCAGGACTTTGTCGGTATCGTCTGTCTGTTGGTCATCAACTCCACTATCAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCAGCTGCTCTTATGGCTGGTCTTGCACCTAAGACTAAGGTTTTGAGGGATGGGAAATGGTGTGAAGAAGATGCATCAATTCTAGTTCCAGGAGATGTGATCAGTGTGAAATTGGGAGATATCATTCCGGCCGATGCTCGTCTTCTCGAGGGTGATCCGTTAAAGGTTGACCAATCTGCATTGACTGGAGAATCACTTCCTGTGACCAAGCATCCAGGGGATGAAGTTTTTTCAGGCTCAACTTGTAAACAAGGAGAAATTGAAGCTGTTGTTATTGCCACTGGTGTCCACACCTTCTTTGGAAAGGCTGCTCATCTTGTTGACAGCACCAACCAAGTGGGTCACTTCCAAAAGGTTCTTACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCCGTTGGTATGGCGATTGAGATCATCGTCATGTACCCTATCCAACGACGTCGCTACCGAGATGGAATCGACAACCTTTTGGTGCTCTTGATTGGTGGAATTCCAATTGCTATGCCTACTGTCTTGTCTGTGACAATGGCTATTGGATCTCACAAGCTGTCCCAACAAGGAGCTATCACTAAGAGAATGACCGCTATCGAAGAAATGGCCGGTATGGACGTCCTCTGCAGTGACAAGACCGGAACGCTTACGCTTAACAAGTTGAGTGTTGACAAAAACTTGATTGAGGTATTTATCAAGGGTGTAGACAAAGAGCATGTCATTCTTCTTGCTGCAAGGGCTTCTAGGACTGAAAACCAAGATGCCATTGATGCTGCCATGGTTGGAATGCTCGCTGACCCGAAAGAGGCAAGAGCTGGAATTAGAGAAATTCACTTCTTACCATTCAACCCTGTGGACAAGAGAACTGCTTTGACTTACATCGATTCCAATGGTAACTGGCACCGTGCTAGCAAAGGTGCACCCGAGCAGATCTTGGAACTTTGCAACTGTAGAGAGGACTTCAAGAGGAAGGTATTTTCCGTAATTGACAAGTTCGCCGAGCGTGGACTCCGATCGTTGGCTGTTGCTAGACAGGAAGTGCCTGAAAAGACTAAAGAGAGTGCTGGTACTCCATGGCAATTCGTCGGTTTGTTGCCTCTTTTCGATCCTCCTCGACACGACAGTGCGGAAACCATCCGCAGGGCCCTCAACTTAGGAGTGAATGTCAAGATGATTACTGGTGATCAACTTGCTATTGGAAAGGAAACTGGCCGAAGACTTGGAATGGGAACAAATATGTATCCATCTTCTTCCTTACTCGGTCAACACAAGGACGAAAGCATAGCCGGTCTCCCAGTTGAAGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCAGAACACAAATATGAGATTGTCAAGAAGTTGCAAGAGAGAAAGCACATTTGTGGAATGACAGGAGATGGCGTGAATGATGCTCCTGCTTTGAAGAAGGCTGACATTGGTATTGCTGTTGCTGATGCTACCGATGCTGCACGAAGCGCTTCAGATATCGTTCTAACCGAACCTGGATTGAGTGTTATCATTAGTGCCGTGTTGACTAGCAGAGCAATTTTCCAGAGGATGAAGAATTATACCATTTATGCAGTTTCCATCACCATTCGTATTGTGTTTGGCTTCATGTTAATTGCTCTCATTTGGAAGTTCGATTTCTCACCGTTCATGGTTTTGATTATCGCGATCTTGAACGATGGTACAATTATGACAATCTCAAAGGACAGAGTGAAGCCATCTCCATTGCCAGACAGTTGGAAATTGAAGGAGATCTTCGCAACCGGAGTCGTACTCGGAGGGTACTTGGCATTGATGACAGTTATATTCTTCTGGTTAATGGACGGAACCAACTTCTTCACAGATAAATTTGGTGTAAGATCGATCCGTGGGAGCGAATTTGAAAAGATGGCTGCTCTATACTTGCAAGTGAGTATTGTCAGTCAGGCTTTGATTTTTGTAACTCGGTCGCGTAGTTGGTCATATGTCGAGCGCCCTGGATTTCTCTTAGTTGGTGCTTTCTTCATTGCACAACTGGTTGCGACTTTGATCGCCGTGTATGCTAACTGGCGATTTGCCAAGATCAAAGGAATCGGATGGGGATGGGCCGGTGTCATCTGGCTTTACAGCATTGTCTTCTACATTCCACTCGATATCATGAAGTTCGCTATTCGATTTATCTTGAGCGGAAAGGCGTGGAACAACTTGTTAGATAACAAGACTGCTTTCACCACCAAGAAAGACTATGGAAAAGAGGAAAGAGAAGCTCAATGGGCACTTGCTCAAAGAACATTACATGGACTTCAACCTCCCGAATCGACAAACCTCTTCTCCGAGAAGAGCAGCTACAGAGAACTCTCCGAGATTGCTGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGCTCCGAGAGCTCAACACGCTCAAGGGTCACGTCGAGTCCGTGGTGAAGTTGAAGGGACTTGACATCGACACGATCCAGCAACACTACACAGTGTGA | 2862 | 46.12 | MASDTLTLEGIKNETVDLEKIPIEEVFEQLKCTREGLSSQEGVNRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGRGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEEDASILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMAIEIIVMYPIQRRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFIKGVDKEHVILLAARASRTENQDAIDAAMVGMLADPKEARAGIREIHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQILELCNCREDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESAGTPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTNFFTDKFGVRSIRGSEFEKMAALYLQVSIVSQALIFVTRSRSWSYVERPGFLLVGAFFIAQLVATLIAVYANWRFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRFILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNLFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV | 953 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5847127 | 5855236 | + | Sed0012255.1 | Sed11g0557 | 729203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g0557 | 953 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 333 | 339 | IPR018303 | - | |
| Sed11g0557 | 953 | NCBIfam | HAD-IC family P-type ATPase | 103 | 350 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | NCBIfam | HAD-IC family P-type ATPase | 565 | 678 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | Gene3D | - | 343 | 490 | IPR023299 | GO:0000166(InterPro) | |
| Sed11g0557 | 953 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
| Sed11g0557 | 953 | Gene3D | - | 96 | 817 | - | - | |
| Sed11g0557 | 953 | FunFam | Plasma membrane ATPase | 343 | 490 | - | - | |
| Sed11g0557 | 953 | Gene3D | - | 902 | 953 | - | - | |
| Sed11g0557 | 953 | FunFam | ATPase 4 plasma membrane-type | 575 | 817 | - | - | |
| Sed11g0557 | 953 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 36 | 808 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed11g0557 | 953 | SFLD | Haloacid Dehalogenase | 313 | 641 | - | - | |
| Sed11g0557 | 953 | SUPERFAMILY | Calcium ATPase, transduction domain A | 134 | 231 | IPR008250 | - | |
| Sed11g0557 | 953 | FunFam | Plasma membrane ATPase | 134 | 218 | - | - | |
| Sed11g0557 | 953 | Gene3D | - | 134 | 218 | - | - | |
| Sed11g0557 | 953 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 849 | IPR023298 | - | |
| Sed11g0557 | 953 | Coils | Coil | 904 | 924 | - | - | |
| Sed11g0557 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 447 | 465 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 621 | 646 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 606 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 762 | 783 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 562 | 578 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g0557 | 953 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
| Sed11g0557 | 953 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 19 | 877 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed11g0557 | 953 | FunFam | Plasma membrane ATPase | 483 | 638 | - | - | |
| Sed11g0557 | 953 | SUPERFAMILY | HAD-like | 327 | 637 | IPR036412 | - | |
| Sed11g0557 | 953 | Gene3D | - | 328 | 627 | IPR023214 | - | |
| Sed11g0557 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 507 | 517 | - | - | |
| Sed11g0557 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 485 | 496 | - | - | |
| Sed11g0557 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 613 | 625 | - | - | |
| Sed11g0557 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 331 | 345 | - | - | |
| Sed11g0557 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 590 | 609 | - | - | |
| Sed11g0557 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 181 | 195 | - | - | |
| Sed11g0557 | 953 | CDD | P-type_ATPase_H | 36 | 843 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed11g0557 | 953 | SFLD | p-type atpase | 313 | 641 | IPR044492 | - | |
| Sed11g0557 | 953 | Pfam | haloacid dehalogenase-like hydrolase | 327 | 604 | - | - | |
| Sed11g0557 | 953 | Pfam | E1-E2 ATPase | 133 | 310 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g1412 | Sed-Chr5:27526095 | Sed11g0557 | Sed-Chr11:5847127 | 0.00E+00 | dispersed | |
| Sed05g1642 | Sed-Chr5:30320985 | Sed11g0557 | Sed-Chr11:5847127 | 8.30E-273 | dispersed | |
| Sed06g2070 | Sed-Chr6:44709744 | Sed11g0557 | Sed-Chr11:5847127 | 0.00E+00 | dispersed | |
| Sed08g0498 | Sed-Chr8:3248241 | Sed11g0557 | Sed-Chr11:5847127 | 0.00E+00 | dispersed | |
| Sed08g0606 | Sed-Chr8:4183040 | Sed11g0557 | Sed-Chr11:5847127 | 0.00E+00 | dispersed | |
| Sed11g0557 | Sed-Chr11:5847127 | Sed12g2309 | Sed-Chr12:33241248 | 0.00E+00 | dispersed | |
| Sed11g0557 | Sed-Chr11:5847127 | Sed03g2821 | Sed-Chr3:45094028 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g0557 | K01535 | - | csv:101221564 | 1752.64 |