Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0565 ATGGCTGAGGAGGCAATGGAGAAGAAGAAAGTGATGAGAGAAAACAAGTTGCAAAGAAGCCATTTTGATGTGTTGGGATTGTGTTGCTCATCTGAAATCCCTCTCATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAAGACATCACTGTCATTGTCCCTACAAGAACTATTATTGTCGTCCATGATTCTCTCCTCATTTCCCAGCTCCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATGTACAAATAAATGGAAAGGGATTAATTAGGAAGAAGAAATGGCCAAGCCCTTTTGCAATAGCCAGTGGGTTGCTTCTAACGGCGTCGTTTTTGAAGTATTTGTACCACCCCTTGCGGTGGCTGGCCGTCGCTGCCGTCGCCGCCGGCATCTTTCCGATTCTCTTGAAGGCTATTTCTGCCATTCGCCACCTTAGAATCGATGTCAACATTCTTGCTGTTATTGCTGTTGTGGGGACAATTGCATTGAATGACTACATGGAGGCTGGGAGTATAGTCTTCTTGTTTTCCATTGCTGAATGGCTTGAAACACTAGCAAGCCACAAGGCCAATGCTGCAATGTCCTCATTAATGAGCTTAGCCCCTCAAAAAGCAACCATAGCTGAAAGTGGAGAGGTTGTGGATTCCAAAGATGTAAAATTGAACACTATTTTGGCTGTGAAGGCTGGTGAAGCTATTCCCATTGATGGGATTGTTGTGGATGGAAAATGTGAAGTTGATGAAAAAACTTTGACTGGAGAATCTTTCCCAGTTCCCAAACAAAAAGATTCCATTGTTTGGGCGGGTACCATCAACTTAAATGGTTATATTACTGTGCAGACTACTGTTGTAGCAGAGGATTGTGCGGTTGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAATAACAAATCCAGAACTCAAAGATTCATTGATGAATGTGCAAAATATTACACCCCAGCTGTTCTTGTCATATCAGCTTGTCTTGCAGCCATTCCAGCTGCAATGAGAGTTCACAATCTCAGCCATTGGTTTCACTTGGCTCTTGTTGTTTTAGTTAGTGCATGTCCGTGCGCCCTAATCCTCTCAACCCCGGTCGCTGCTTTCTGCGCACTCACGAAGGCCGCCATGGCCGGAGTTCTTATCAAAGGTGGTGACCACCTTGAAGTTCTTGCAAAGGTTAAGGTTATGGCATTCGACAAGACTGGCACAATCACTCGAGGTGAATTCTTGGTTTCCGATTTTCGAACTCTGCAAGATGATATAAGCTTACACACCTTGCTTCATTGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTATCAACCATGCAAAGCTCCTTTCGATCGATATAAAACCCGAAAACGTTGAGGAATTCGAGAATTTTCCAGGAGAAGGTGTTCATGGGAAAATAAATGGGAACAATATTTACATTGGAAGTAGAAAAATTGCTGCTAGAGCTGGTTGCACAACAGTTCCGAGCTTAGACGACGAAACGAAACAAGGGCAGACCATTGGATATATATTTTACGGGGCGACGTTAGCCGGATCCTTCGGTCTTTCAGATGCGTGTCGATCCGGAGTTAAGGAAGCGATCGAGGAAATTAAGAGTTTTGGTATAAAAACAGCTATGCTCACTGGAGATTGTAGTGCAGCAGCCATGTATGCTCAACAACAGCTAGGGAATGCGCTCGACATAATCCATTCCGAACTTCTACCGAAGGGGAAGGCGAATATCATAAAAGGATTTAAAAGGGAAGGACCAACTGCCATGGTTGGAGATGGCTTAAATGATACTCTAGCATTAGCCACGGCTGATATTGGCATATCAATGGGGGTTTCAGGTTCAGCATTAGCCACTGAAACTGGGAATGTGATCCTAATGTCAAATGACATGAGGAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATCCCATGTAAAAGTAGTGCAAAATGTCATCTTGTCCATAGTAACAAAAACCGCAATCATCGGCTTGGCAATTGCTGGACATCCGCTTGTGTGGGCTGCGGTTCTTGCCGATGTCGGTACTTGTCTATTGGTCATCTTGAACAGCATGTTGCTTTTGAGAGGAACTGATCACAAACATGGAAAGAAATGTTGCAAATCTTCCAAAGCATGTTCCACGAAACATGGACGATGCAATGGTGGTGATGGTCGATTGTCTCATCGTCACAATCATCATCACGATAATCATAGATGCAATGTCGTCGATCATCGATCTCCTAGCCTAGAGAATCATGATCATAAGCATTCTTGTTCTGAGAAAAAGGATCATGGGCTTCATCATCTTAACGAACATAAATTTGATCACAACCATTCAAATCAATGTGAGAAAAAACCACTAGAGCAAGAGAATAATGCAAATTATTTAAGGAAAGTGGATAAATCAAATTGTAATTGCCATTCACATCATGTTGCCATTGACATACATGAAAGTGCCAATTGTGAGAGAGTAGAGCACAAATAA 2517 42.79 MAEEAMEKKKVMRENKLQRSHFDVLGLCCSSEIPLIENILKPLEGIKDITVIVPTRTIIVVHDSLLISQLQIVKALNEARLEANVQINGKGLIRKKKWPSPFAIASGLLLTASFLKYLYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAVIAVVGTIALNDYMEAGSIVFLFSIAEWLETLASHKANAAMSSLMSLAPQKATIAESGEVVDSKDVKLNTILAVKAGEAIPIDGIVVDGKCEVDEKTLTGESFPVPKQKDSIVWAGTINLNGYITVQTTVVAEDCAVAKMAELVEEAQNNKSRTQRFIDECAKYYTPAVLVISACLAAIPAAMRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGDHLEVLAKVKVMAFDKTGTITRGEFLVSDFRTLQDDISLHTLLHWVSSIESKSSHPMAAALINHAKLLSIDIKPENVEEFENFPGEGVHGKINGNNIYIGSRKIAARAGCTTVPSLDDETKQGQTIGYIFYGATLAGSFGLSDACRSGVKEAIEEIKSFGIKTAMLTGDCSAAAMYAQQQLGNALDIIHSELLPKGKANIIKGFKREGPTAMVGDGLNDTLALATADIGISMGVSGSALATETGNVILMSNDMRKIPKAIKLAKKSHVKVVQNVILSIVTKTAIIGLAIAGHPLVWAAVLADVGTCLLVILNSMLLLRGTDHKHGKKCCKSSKACSTKHGRCNGGDGRLSHRHNHHHDNHRCNVVDHRSPSLENHDHKHSCSEKKDHGLHHLNEHKFDHNHSNQCEKKPLEQENNANYLRKVDKSNCNCHSHHVAIDIHESANCERVEHK 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6066640 6076804 + Sed0019519.1 Sed11g0565 729211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0565 838 NCBIfam heavy metal translocating P-type ATPase 152 704 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed11g0565 838 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 395 IPR023298 -
Sed11g0565 838 SFLD Haloacid Dehalogenase 383 653 - -
Sed11g0565 838 FunFam Copper-transporting ATPase 1, putative 190 304 - -
Sed11g0565 838 PRINTS P-type cation-transporting ATPase superfamily signature 547 557 - -
Sed11g0565 838 PRINTS P-type cation-transporting ATPase superfamily signature 601 620 - -
Sed11g0565 838 PRINTS P-type cation-transporting ATPase superfamily signature 250 264 - -
Sed11g0565 838 PRINTS P-type cation-transporting ATPase superfamily signature 401 415 - -
Sed11g0565 838 PRINTS P-type cation-transporting ATPase superfamily signature 625 637 - -
Sed11g0565 838 NCBIfam HAD-IC family P-type ATPase 175 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g0565 838 SUPERFAMILY HAD-like 400 702 IPR036412 -
Sed11g0565 838 FunFam Putative cadmium/zinc-transporting ATPase 3 14 87 - -
Sed11g0565 838 SFLD p-type atpase 383 653 IPR044492 -
Sed11g0565 838 Pfam E1-E2 ATPase 203 379 - -
Sed11g0565 838 NCBIfam cadmium family heavy metal-translocating P-type ATPase 152 507 - -
Sed11g0565 838 CDD P-type_ATPase_HM 102 703 - -
Sed11g0565 838 Pfam haloacid dehalogenase-like hydrolase 397 615 - -
Sed11g0565 838 Gene3D - 189 304 - -
Sed11g0565 838 Gene3D - 393 652 IPR023214 -
Sed11g0565 838 Gene3D - 14 87 - -
Sed11g0565 838 FunFam Putative cadmium/zinc-transporting ATPase 3 412 533 - -
Sed11g0565 838 SUPERFAMILY Calcium ATPase, transduction domain A 215 300 IPR008250 -
Sed11g0565 838 Gene3D - 412 533 IPR023299 GO:0000166(InterPro)
Sed11g0565 838 ProSitePatterns E1-E2 ATPases phosphorylation site. 403 409 IPR018303 -
Sed11g0565 838 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 12 808 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Sed11g0565 838 ProSiteProfiles Heavy-metal-associated domain profile. 18 84 IPR006121 GO:0046872(InterPro)
Sed11g0565 838 SUPERFAMILY HMA, heavy metal-associated domain 13 83 IPR036163 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3731 Sed-Chr5:45229701 Sed11g0565 Sed-Chr11:6066640 1.60E-33 dispersed
Sed11g0565 Sed-Chr11:6066640 Sed14g1639 Sed-Chr14:24568967 8.60E-65 dispersed
Sed11g0565 Sed-Chr11:6066640 Sed11g0566 Sed-Chr11:6105915 7.40E-202 tandem
Sed11g0565 Sed-Chr11:6066640 Sed12g2195 Sed-Chr12:32410702 1.10E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0565 K01534 - csv:101203668 1264.21