Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0565 | ATGGCTGAGGAGGCAATGGAGAAGAAGAAAGTGATGAGAGAAAACAAGTTGCAAAGAAGCCATTTTGATGTGTTGGGATTGTGTTGCTCATCTGAAATCCCTCTCATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAAGACATCACTGTCATTGTCCCTACAAGAACTATTATTGTCGTCCATGATTCTCTCCTCATTTCCCAGCTCCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATGTACAAATAAATGGAAAGGGATTAATTAGGAAGAAGAAATGGCCAAGCCCTTTTGCAATAGCCAGTGGGTTGCTTCTAACGGCGTCGTTTTTGAAGTATTTGTACCACCCCTTGCGGTGGCTGGCCGTCGCTGCCGTCGCCGCCGGCATCTTTCCGATTCTCTTGAAGGCTATTTCTGCCATTCGCCACCTTAGAATCGATGTCAACATTCTTGCTGTTATTGCTGTTGTGGGGACAATTGCATTGAATGACTACATGGAGGCTGGGAGTATAGTCTTCTTGTTTTCCATTGCTGAATGGCTTGAAACACTAGCAAGCCACAAGGCCAATGCTGCAATGTCCTCATTAATGAGCTTAGCCCCTCAAAAAGCAACCATAGCTGAAAGTGGAGAGGTTGTGGATTCCAAAGATGTAAAATTGAACACTATTTTGGCTGTGAAGGCTGGTGAAGCTATTCCCATTGATGGGATTGTTGTGGATGGAAAATGTGAAGTTGATGAAAAAACTTTGACTGGAGAATCTTTCCCAGTTCCCAAACAAAAAGATTCCATTGTTTGGGCGGGTACCATCAACTTAAATGGTTATATTACTGTGCAGACTACTGTTGTAGCAGAGGATTGTGCGGTTGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAATAACAAATCCAGAACTCAAAGATTCATTGATGAATGTGCAAAATATTACACCCCAGCTGTTCTTGTCATATCAGCTTGTCTTGCAGCCATTCCAGCTGCAATGAGAGTTCACAATCTCAGCCATTGGTTTCACTTGGCTCTTGTTGTTTTAGTTAGTGCATGTCCGTGCGCCCTAATCCTCTCAACCCCGGTCGCTGCTTTCTGCGCACTCACGAAGGCCGCCATGGCCGGAGTTCTTATCAAAGGTGGTGACCACCTTGAAGTTCTTGCAAAGGTTAAGGTTATGGCATTCGACAAGACTGGCACAATCACTCGAGGTGAATTCTTGGTTTCCGATTTTCGAACTCTGCAAGATGATATAAGCTTACACACCTTGCTTCATTGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTATCAACCATGCAAAGCTCCTTTCGATCGATATAAAACCCGAAAACGTTGAGGAATTCGAGAATTTTCCAGGAGAAGGTGTTCATGGGAAAATAAATGGGAACAATATTTACATTGGAAGTAGAAAAATTGCTGCTAGAGCTGGTTGCACAACAGTTCCGAGCTTAGACGACGAAACGAAACAAGGGCAGACCATTGGATATATATTTTACGGGGCGACGTTAGCCGGATCCTTCGGTCTTTCAGATGCGTGTCGATCCGGAGTTAAGGAAGCGATCGAGGAAATTAAGAGTTTTGGTATAAAAACAGCTATGCTCACTGGAGATTGTAGTGCAGCAGCCATGTATGCTCAACAACAGCTAGGGAATGCGCTCGACATAATCCATTCCGAACTTCTACCGAAGGGGAAGGCGAATATCATAAAAGGATTTAAAAGGGAAGGACCAACTGCCATGGTTGGAGATGGCTTAAATGATACTCTAGCATTAGCCACGGCTGATATTGGCATATCAATGGGGGTTTCAGGTTCAGCATTAGCCACTGAAACTGGGAATGTGATCCTAATGTCAAATGACATGAGGAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATCCCATGTAAAAGTAGTGCAAAATGTCATCTTGTCCATAGTAACAAAAACCGCAATCATCGGCTTGGCAATTGCTGGACATCCGCTTGTGTGGGCTGCGGTTCTTGCCGATGTCGGTACTTGTCTATTGGTCATCTTGAACAGCATGTTGCTTTTGAGAGGAACTGATCACAAACATGGAAAGAAATGTTGCAAATCTTCCAAAGCATGTTCCACGAAACATGGACGATGCAATGGTGGTGATGGTCGATTGTCTCATCGTCACAATCATCATCACGATAATCATAGATGCAATGTCGTCGATCATCGATCTCCTAGCCTAGAGAATCATGATCATAAGCATTCTTGTTCTGAGAAAAAGGATCATGGGCTTCATCATCTTAACGAACATAAATTTGATCACAACCATTCAAATCAATGTGAGAAAAAACCACTAGAGCAAGAGAATAATGCAAATTATTTAAGGAAAGTGGATAAATCAAATTGTAATTGCCATTCACATCATGTTGCCATTGACATACATGAAAGTGCCAATTGTGAGAGAGTAGAGCACAAATAA | 2517 | 42.79 | MAEEAMEKKKVMRENKLQRSHFDVLGLCCSSEIPLIENILKPLEGIKDITVIVPTRTIIVVHDSLLISQLQIVKALNEARLEANVQINGKGLIRKKKWPSPFAIASGLLLTASFLKYLYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAVIAVVGTIALNDYMEAGSIVFLFSIAEWLETLASHKANAAMSSLMSLAPQKATIAESGEVVDSKDVKLNTILAVKAGEAIPIDGIVVDGKCEVDEKTLTGESFPVPKQKDSIVWAGTINLNGYITVQTTVVAEDCAVAKMAELVEEAQNNKSRTQRFIDECAKYYTPAVLVISACLAAIPAAMRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGDHLEVLAKVKVMAFDKTGTITRGEFLVSDFRTLQDDISLHTLLHWVSSIESKSSHPMAAALINHAKLLSIDIKPENVEEFENFPGEGVHGKINGNNIYIGSRKIAARAGCTTVPSLDDETKQGQTIGYIFYGATLAGSFGLSDACRSGVKEAIEEIKSFGIKTAMLTGDCSAAAMYAQQQLGNALDIIHSELLPKGKANIIKGFKREGPTAMVGDGLNDTLALATADIGISMGVSGSALATETGNVILMSNDMRKIPKAIKLAKKSHVKVVQNVILSIVTKTAIIGLAIAGHPLVWAAVLADVGTCLLVILNSMLLLRGTDHKHGKKCCKSSKACSTKHGRCNGGDGRLSHRHNHHHDNHRCNVVDHRSPSLENHDHKHSCSEKKDHGLHHLNEHKFDHNHSNQCEKKPLEQENNANYLRKVDKSNCNCHSHHVAIDIHESANCERVEHK | 838 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6066640 | 6076804 | + | Sed0019519.1 | Sed11g0565 | 729211 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0565 | 838 | NCBIfam | heavy metal translocating P-type ATPase | 152 | 704 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Sed11g0565 | 838 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 153 | 395 | IPR023298 | - | |
Sed11g0565 | 838 | SFLD | Haloacid Dehalogenase | 383 | 653 | - | - | |
Sed11g0565 | 838 | FunFam | Copper-transporting ATPase 1, putative | 190 | 304 | - | - | |
Sed11g0565 | 838 | PRINTS | P-type cation-transporting ATPase superfamily signature | 547 | 557 | - | - | |
Sed11g0565 | 838 | PRINTS | P-type cation-transporting ATPase superfamily signature | 601 | 620 | - | - | |
Sed11g0565 | 838 | PRINTS | P-type cation-transporting ATPase superfamily signature | 250 | 264 | - | - | |
Sed11g0565 | 838 | PRINTS | P-type cation-transporting ATPase superfamily signature | 401 | 415 | - | - | |
Sed11g0565 | 838 | PRINTS | P-type cation-transporting ATPase superfamily signature | 625 | 637 | - | - | |
Sed11g0565 | 838 | NCBIfam | HAD-IC family P-type ATPase | 175 | 678 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g0565 | 838 | SUPERFAMILY | HAD-like | 400 | 702 | IPR036412 | - | |
Sed11g0565 | 838 | FunFam | Putative cadmium/zinc-transporting ATPase 3 | 14 | 87 | - | - | |
Sed11g0565 | 838 | SFLD | p-type atpase | 383 | 653 | IPR044492 | - | |
Sed11g0565 | 838 | Pfam | E1-E2 ATPase | 203 | 379 | - | - | |
Sed11g0565 | 838 | NCBIfam | cadmium family heavy metal-translocating P-type ATPase | 152 | 507 | - | - | |
Sed11g0565 | 838 | CDD | P-type_ATPase_HM | 102 | 703 | - | - | |
Sed11g0565 | 838 | Pfam | haloacid dehalogenase-like hydrolase | 397 | 615 | - | - | |
Sed11g0565 | 838 | Gene3D | - | 189 | 304 | - | - | |
Sed11g0565 | 838 | Gene3D | - | 393 | 652 | IPR023214 | - | |
Sed11g0565 | 838 | Gene3D | - | 14 | 87 | - | - | |
Sed11g0565 | 838 | FunFam | Putative cadmium/zinc-transporting ATPase 3 | 412 | 533 | - | - | |
Sed11g0565 | 838 | SUPERFAMILY | Calcium ATPase, transduction domain A | 215 | 300 | IPR008250 | - | |
Sed11g0565 | 838 | Gene3D | - | 412 | 533 | IPR023299 | GO:0000166(InterPro) | |
Sed11g0565 | 838 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 403 | 409 | IPR018303 | - | |
Sed11g0565 | 838 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 12 | 808 | IPR051014 | GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER) | |
Sed11g0565 | 838 | ProSiteProfiles | Heavy-metal-associated domain profile. | 18 | 84 | IPR006121 | GO:0046872(InterPro) | |
Sed11g0565 | 838 | SUPERFAMILY | HMA, heavy metal-associated domain | 13 | 83 | IPR036163 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3731 | Sed-Chr5:45229701 | Sed11g0565 | Sed-Chr11:6066640 | 1.60E-33 | dispersed | |
Sed11g0565 | Sed-Chr11:6066640 | Sed14g1639 | Sed-Chr14:24568967 | 8.60E-65 | dispersed | |
Sed11g0565 | Sed-Chr11:6066640 | Sed11g0566 | Sed-Chr11:6105915 | 7.40E-202 | tandem | |
Sed11g0565 | Sed-Chr11:6066640 | Sed12g2195 | Sed-Chr12:32410702 | 1.10E-277 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0565 | K01534 | - | csv:101203668 | 1264.21 |