Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0566 ATGGGTGAGCTTGTAAAAGAAGCTCAAAATAACAAATCCAAAACTCAGAGATTCATTGAAGAATGTGCAAAATATTACACCCCAGTTGTTCTTGTCATATCAGCTTGTCTTGCAGCCATTCCAGCTGCAATGAGAGTTCACAATCTCAGCCATTGGTTTCACTTAGCTCTTGTTGTTTTAGTTAGTGCATTTCCCTGCGCCCTAATCCTTTCCGCCCCGATCGCCGCATTTTTCGCAGTCACGAAGGCAGCCATGGCTGGAGTTCTAATCAAAGGCGGCAACCACCTTGAAGTTCTTGCAAAGATTAAGGTTATGGCATTCGACAAGACTGGCACAATCACTCGAGGTGAATTTGTGGTTAGAGATATTCGAACACTACAAGATGATATCAGCTTGCACACCTTGCTTCATTGGATTTCAAGCATTGAGAGCAAATCAAGTCATCCAATGGCAGCTGCCTTTATCAGCCATGGAAAGCTCCTTTCAGTCGATATTAAACCCAAAAACGTCGATGAATTCGAGAATTTTCCAGGAGAAGGTGTTCATGGAAAAATAGATGGGAACAATATTTACATTGGAAGTAGAAAAATTGCTCTTAGAGCTGGCTGCAAAACAGTTCCGAACTTAGACAAGGAAATGAAACAAGGGCAGACTGTCGGATATGTATTTTGTGGGGCAACGCTAGCCGGATCCTTCAGTCTTTCGGATGCGTGTCGATCGGGAGTTAAAGAGGGGATTGAGGAAATTAAGAGTTTTGGTATAAAAACAGCCATGCTTACTGGAGATTGTAGGGCAGCAGCCATGCATGCCCAACAAAAGCTAGGGAACGCGCTCGATGTAATCCATTTCGAACTTCTACCGAAGGAGAAGGCACGTATCGTAAAAGAATTTAAAAGGGATGGACCAACTGCCATGGTTGGAGATAGTTCAAATGATACCCCAGCATTTGCCACAGCTGATATTGGTATAACAATGGGGGTTTCAAGCTCAGCATTAGCCAGTGAGACTGGGAATGTAATCCTAACATCAAATGACATGAGAAAAATTCCAAAAGCCATCAGACTAGCAAAGAAATGCCATGCAAAAGTAGTTCAAAATGTCATTTTGTCGATAGGTACGAAGACCGCAATCATCGGCTTGGCAATCGGTGGACATCCGCTCATCTGGGCGGCCGTCCTCACCGATGTCGGTACCTGCCTATTGGTCATCTTAAACAGCATGCTTCTTTTAAGAGAAACTAAGCATAAACATGGAAAAAAATCTTTCAAACCATATTCCACAAAACATGTTACTATTGACATTCATGATGGTAATACTGTGAGGGAATAG 1329 42.81 MGELVKEAQNNKSKTQRFIEECAKYYTPVVLVISACLAAIPAAMRVHNLSHWFHLALVVLVSAFPCALILSAPIAAFFAVTKAAMAGVLIKGGNHLEVLAKIKVMAFDKTGTITRGEFVVRDIRTLQDDISLHTLLHWISSIESKSSHPMAAAFISHGKLLSVDIKPKNVDEFENFPGEGVHGKIDGNNIYIGSRKIALRAGCKTVPNLDKEMKQGQTVGYVFCGATLAGSFSLSDACRSGVKEGIEEIKSFGIKTAMLTGDCRAAAMHAQQKLGNALDVIHFELLPKEKARIVKEFKRDGPTAMVGDSSNDTPAFATADIGITMGVSSSALASETGNVILTSNDMRKIPKAIRLAKKCHAKVVQNVILSIGTKTAIIGLAIGGHPLIWAAVLTDVGTCLLVILNSMLLLRETKHKHGKKSFKPYSTKHVTIDIHDGNTVRE 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6105915 6110454 + Sed0014598.1 Sed11g0566 729212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0566 442 Gene3D - 117 238 IPR023299 GO:0000166(InterPro)
Sed11g0566 442 FunFam Putative cadmium/zinc-transporting ATPase 3 117 238 - -
Sed11g0566 442 SUPERFAMILY Calcium ATPase, transmembrane domain M 8 198 IPR023298 -
Sed11g0566 442 Pfam haloacid dehalogenase-like hydrolase 102 320 - -
Sed11g0566 442 SFLD Haloacid Dehalogenase 88 358 - -
Sed11g0566 442 NCBIfam heavy metal translocating P-type ATPase 3 409 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed11g0566 442 ProSitePatterns E1-E2 ATPases phosphorylation site. 108 114 IPR018303 -
Sed11g0566 442 Gene3D - 98 357 IPR023214 -
Sed11g0566 442 Pfam E1-E2 ATPase 3 84 - -
Sed11g0566 442 SUPERFAMILY HAD-like 105 407 IPR036412 -
Sed11g0566 442 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 425 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Sed11g0566 442 SFLD p-type atpase 88 358 IPR044492 -
Sed11g0566 442 PRINTS P-type cation-transporting ATPase superfamily signature 106 120 - -
Sed11g0566 442 PRINTS P-type cation-transporting ATPase superfamily signature 252 262 - -
Sed11g0566 442 PRINTS P-type cation-transporting ATPase superfamily signature 306 325 - -
Sed11g0566 442 PRINTS P-type cation-transporting ATPase superfamily signature 330 342 - -
Sed11g0566 442 NCBIfam HAD-IC family P-type ATPase 4 385 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0566 Sed-Chr11:6105915 Sed12g2195 Sed-Chr12:32410702 1.90E-156 dispersed
Sed11g0565 Sed-Chr11:6066640 Sed11g0566 Sed-Chr11:6105915 7.40E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0566 K01534 - csv:101203668 648.662