Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0566 | ATGGGTGAGCTTGTAAAAGAAGCTCAAAATAACAAATCCAAAACTCAGAGATTCATTGAAGAATGTGCAAAATATTACACCCCAGTTGTTCTTGTCATATCAGCTTGTCTTGCAGCCATTCCAGCTGCAATGAGAGTTCACAATCTCAGCCATTGGTTTCACTTAGCTCTTGTTGTTTTAGTTAGTGCATTTCCCTGCGCCCTAATCCTTTCCGCCCCGATCGCCGCATTTTTCGCAGTCACGAAGGCAGCCATGGCTGGAGTTCTAATCAAAGGCGGCAACCACCTTGAAGTTCTTGCAAAGATTAAGGTTATGGCATTCGACAAGACTGGCACAATCACTCGAGGTGAATTTGTGGTTAGAGATATTCGAACACTACAAGATGATATCAGCTTGCACACCTTGCTTCATTGGATTTCAAGCATTGAGAGCAAATCAAGTCATCCAATGGCAGCTGCCTTTATCAGCCATGGAAAGCTCCTTTCAGTCGATATTAAACCCAAAAACGTCGATGAATTCGAGAATTTTCCAGGAGAAGGTGTTCATGGAAAAATAGATGGGAACAATATTTACATTGGAAGTAGAAAAATTGCTCTTAGAGCTGGCTGCAAAACAGTTCCGAACTTAGACAAGGAAATGAAACAAGGGCAGACTGTCGGATATGTATTTTGTGGGGCAACGCTAGCCGGATCCTTCAGTCTTTCGGATGCGTGTCGATCGGGAGTTAAAGAGGGGATTGAGGAAATTAAGAGTTTTGGTATAAAAACAGCCATGCTTACTGGAGATTGTAGGGCAGCAGCCATGCATGCCCAACAAAAGCTAGGGAACGCGCTCGATGTAATCCATTTCGAACTTCTACCGAAGGAGAAGGCACGTATCGTAAAAGAATTTAAAAGGGATGGACCAACTGCCATGGTTGGAGATAGTTCAAATGATACCCCAGCATTTGCCACAGCTGATATTGGTATAACAATGGGGGTTTCAAGCTCAGCATTAGCCAGTGAGACTGGGAATGTAATCCTAACATCAAATGACATGAGAAAAATTCCAAAAGCCATCAGACTAGCAAAGAAATGCCATGCAAAAGTAGTTCAAAATGTCATTTTGTCGATAGGTACGAAGACCGCAATCATCGGCTTGGCAATCGGTGGACATCCGCTCATCTGGGCGGCCGTCCTCACCGATGTCGGTACCTGCCTATTGGTCATCTTAAACAGCATGCTTCTTTTAAGAGAAACTAAGCATAAACATGGAAAAAAATCTTTCAAACCATATTCCACAAAACATGTTACTATTGACATTCATGATGGTAATACTGTGAGGGAATAG | 1329 | 42.81 | MGELVKEAQNNKSKTQRFIEECAKYYTPVVLVISACLAAIPAAMRVHNLSHWFHLALVVLVSAFPCALILSAPIAAFFAVTKAAMAGVLIKGGNHLEVLAKIKVMAFDKTGTITRGEFVVRDIRTLQDDISLHTLLHWISSIESKSSHPMAAAFISHGKLLSVDIKPKNVDEFENFPGEGVHGKIDGNNIYIGSRKIALRAGCKTVPNLDKEMKQGQTVGYVFCGATLAGSFSLSDACRSGVKEGIEEIKSFGIKTAMLTGDCRAAAMHAQQKLGNALDVIHFELLPKEKARIVKEFKRDGPTAMVGDSSNDTPAFATADIGITMGVSSSALASETGNVILTSNDMRKIPKAIRLAKKCHAKVVQNVILSIGTKTAIIGLAIGGHPLIWAAVLTDVGTCLLVILNSMLLLRETKHKHGKKSFKPYSTKHVTIDIHDGNTVRE | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6105915 | 6110454 | + | Sed0014598.1 | Sed11g0566 | 729212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0566 | 442 | Gene3D | - | 117 | 238 | IPR023299 | GO:0000166(InterPro) | |
Sed11g0566 | 442 | FunFam | Putative cadmium/zinc-transporting ATPase 3 | 117 | 238 | - | - | |
Sed11g0566 | 442 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 8 | 198 | IPR023298 | - | |
Sed11g0566 | 442 | Pfam | haloacid dehalogenase-like hydrolase | 102 | 320 | - | - | |
Sed11g0566 | 442 | SFLD | Haloacid Dehalogenase | 88 | 358 | - | - | |
Sed11g0566 | 442 | NCBIfam | heavy metal translocating P-type ATPase | 3 | 409 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Sed11g0566 | 442 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 108 | 114 | IPR018303 | - | |
Sed11g0566 | 442 | Gene3D | - | 98 | 357 | IPR023214 | - | |
Sed11g0566 | 442 | Pfam | E1-E2 ATPase | 3 | 84 | - | - | |
Sed11g0566 | 442 | SUPERFAMILY | HAD-like | 105 | 407 | IPR036412 | - | |
Sed11g0566 | 442 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 1 | 425 | IPR051014 | GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER) | |
Sed11g0566 | 442 | SFLD | p-type atpase | 88 | 358 | IPR044492 | - | |
Sed11g0566 | 442 | PRINTS | P-type cation-transporting ATPase superfamily signature | 106 | 120 | - | - | |
Sed11g0566 | 442 | PRINTS | P-type cation-transporting ATPase superfamily signature | 252 | 262 | - | - | |
Sed11g0566 | 442 | PRINTS | P-type cation-transporting ATPase superfamily signature | 306 | 325 | - | - | |
Sed11g0566 | 442 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 342 | - | - | |
Sed11g0566 | 442 | NCBIfam | HAD-IC family P-type ATPase | 4 | 385 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0566 | Sed-Chr11:6105915 | Sed12g2195 | Sed-Chr12:32410702 | 1.90E-156 | dispersed | |
Sed11g0565 | Sed-Chr11:6066640 | Sed11g0566 | Sed-Chr11:6105915 | 7.40E-202 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0566 | K01534 | - | csv:101203668 | 648.662 |