Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0591 | ATGAGTTCGTTCAAGGGATCTCCGTACAGAAGACGGAGAGATTTGGAGTCCGGCAGTGCCAATTCCGGCGAGCCGCCGGAGGAGGAGGGGGAGGATGATTCGTCTAATCCTTTTGAAATTTCCAGAACTAAGCATGCTTCTACTGACAGACTCCGCCGCTGGAGACAAGCTGCTCTAGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCCGGGGATCGTCTCAAAGGTCTAGGACTTGCAACAGCCGAAACTCCAAATGGTGATTTTTCAGTTGGGCTAGAGCAACTGGCTGTGTTGGTAAAGGATCGTAATGTTGAAACTCTGGAGCAATATGGAGGGGTTAAAGGGGTTGCAGATAAGTTACAATCGAATTTAGAGAAGGGGATAACTGGTGATGATTTTGATTTGCTGAAACGGAAAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGAAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTACTAGGCATAAAGACTGAGGGTATCGAGGAAGGCTGGTATGACGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTAAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGAGATTGTTGTTGGTGATGTTATTCCCCTCAATATTGGTGACCAGGTCCCTGCTGATGGCATCGTAATTTCTGGACACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGCTAAGGAACCTTTCATGATGTCTGGATGCAAAGTAGCCGACGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAGTGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGCTTAAATGGTGTGGCAACATTAATTGGTATTGTTGGACTCACAGTAGCATTGGCTGTTTTGGTTGTGCTCCTCACGAGGTATTTCACTGGTCATACCCTAAATCCAGATGGAAGTCGTCAGTTTACTGCAGGCAAGACAAGAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATCGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGAGGAGGCTCTCAGCATGTGAGACGATGGGATCTGCTACAACTATTTGTAGTGATAAGACTGGAACTTTGACTATAAACCAGATGACCATTGTTGAGGCTTATGTTGGTGGAAATAAGACTGATCCGCGAGAGAAGAAGCCAGAGTCGTCTTCCATGTTATACTCCATACTTGTTGAAGGAATTGCTCTGAACTCAAATGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGCAGAGGTTACAGGATCACCTACGGAAAAGGCTATCCTTAATTGGGGCATCAAGCTAGGAATGAACTTTGAAGCAATTAGAACAACAACCACGATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGAGTTGCAGGTCAACGGGATGATCAAGTCCATATACACTGGAAAGGTGCTGCTGAGATCGTTTTAGCATCGTGCACACAGTACATGGATGATCATGATCATATTGTCCAATTAGATGAAGATAAGATGAAGTATTTCATGAGAGCTATTGAGGATATGGCTTCTCGTAGTTTACGTTGTGTCGCAATTGCATATAGACCTTTTGAACCTGAGAATGTTCCTGATGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTGGTTTTGTTGGCTATAGTTGGTCTACAGGACCCCTGTCGACCGGGAGTAAAAGATGCAGTGCGACTTTGTCAAAAAGCTGGCATAAAGGTACGCATGGTCACAGGTGATAATGTCCAAACTGCTAGGGCTATTGCATTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAACATTCCGTGCCCTTTCTGATGCCCAAAGAGAAGAAGTTGCTGAGAGAATATCAGTGATGGGTCGGTCGTCTCCCAATGATAAGCTTCTTCTTGTTCAAGCATTGAGAAAAAGAGGACACGTAGTTGCAGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTGGCAATGGGTATCGAGGGGACAGAAGTTGCCAAAGAGAGTTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGTTCAGTATATGCAAACATTCAGAAATTCATCCAGTTTCAGCTTACTGTCAACGTTGCAGCACTCATTATCAATGTCGTAGCAGCAATATCCTCTGGTGATGTCCCATTAAATGCTGTGCAGCTTTTGTGGGTTAACCTTATTATGGACACACTCGGAGCATTAGCGTTGGCTACTGAACCACCTACTGATCACCTCATGGACAGAACGCCAGTTGGTAGAAGAGAACCTCTTATAACAAATATTATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTTGTCCTCAACTTTCGTGGTCGAAGTTTGCTTCATTTGAATCACTCTCATGTGCAAGCTAACAAATTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGCCAAATTTTCAATGAATTTAATGCTCGAAAACCTGATGAGAAGAATATCTTCAAAGGCGTCAATAAAAATTACCTCTTTATTGGGATCGTTGGAATTACAGTTGTTCTCCAGGTGATAATAATAGAATTTTTGGGGAAGTTCACATCCACAGTCAGGCTTAATTGGAAATATTGGATTATTTCCATAATCATCGGCATTATCAGTTGGCCTCTAGCGCTCATTGGGAAATTCATACCTGTTCCTGAAACACCCTTCCATGTGCTCATTATCAGAATGTTCCGTAAGCGACAACCCGAGGCATCTTAA | 3234 | 43.07 | MSSFKGSPYRRRRDLESGSANSGEPPEEEGEDDSSNPFEISRTKHASTDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGDRLKGLGLATAETPNGDFSVGLEQLAVLVKDRNVETLEQYGGVKGVADKLQSNLEKGITGDDFDLLKRKNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIEEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYEIVVGDVIPLNIGDQVPADGIVISGHSLAIDESSMTGESKIVQKHAKEPFMMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVALAVLVVLLTRYFTGHTLNPDGSRQFTAGKTRVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGNKTDPREKKPESSSMLYSILVEGIALNSNGSVYVPESGGEAEVTGSPTEKAILNWGIKLGMNFEAIRTTTTILHVFPFSSDKKRGGVAGQRDDQVHIHWKGAAEIVLASCTQYMDDHDHIVQLDEDKMKYFMRAIEDMASRSLRCVAIAYRPFEPENVPDGEEQLSKWALPEDDLVLLAIVGLQDPCRPGVKDAVRLCQKAGIKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKTFRALSDAQREEVAERISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIEGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSHVQANKLKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVNKNYLFIGIVGITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGIISWPLALIGKFIPVPETPFHVLIIRMFRKRQPEAS | 1077 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6913248 | 6932166 | + | Sed0010376.1 | Sed11g0591 | 729237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0591 | 1077 | CDD | P-type_ATPase_Ca_PMCA-like | 168 | 926 | - | - | |
Sed11g0591 | 1077 | SFLD | Haloacid Dehalogenase | 468 | 845 | - | - | |
Sed11g0591 | 1077 | Gene3D | - | 169 | 362 | - | - | |
Sed11g0591 | 1077 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 143 | 1056 | IPR023298 | - | |
Sed11g0591 | 1077 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 493 | 690 | IPR023299 | GO:0000166(InterPro) | |
Sed11g0591 | 1077 | SFLD | p-type atpase | 468 | 845 | IPR044492 | - | |
Sed11g0591 | 1077 | Gene3D | - | 46 | 102 | - | - | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase | 194 | 251 | - | - | |
Sed11g0591 | 1077 | SUPERFAMILY | Calcium ATPase, transduction domain A | 263 | 359 | IPR008250 | - | |
Sed11g0591 | 1077 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 35 | 78 | IPR024750 | GO:0005516(InterPro) | |
Sed11g0591 | 1077 | PANTHER | CATION TRANSPORTING ATPASE | 93 | 1056 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase | 496 | 693 | - | - | |
Sed11g0591 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 231 | 403 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g0591 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 760 | 873 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g0591 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 426 | 515 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g0591 | 1077 | Pfam | haloacid dehalogenase-like hydrolase | 484 | 807 | - | - | |
Sed11g0591 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 793 | 812 | - | - | |
Sed11g0591 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 686 | 697 | - | - | |
Sed11g0591 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 310 | 324 | - | - | |
Sed11g0591 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 500 | - | - | |
Sed11g0591 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 817 | 829 | - | - | |
Sed11g0591 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 708 | 718 | - | - | |
Sed11g0591 | 1077 | Coils | Coil | 73 | 93 | - | - | |
Sed11g0591 | 1077 | SUPERFAMILY | HAD-like | 484 | 898 | IPR036412 | - | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 340 | 510 | - | - | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase | 241 | 362 | - | - | |
Sed11g0591 | 1077 | Pfam | Cation transporting ATPase, C-terminus | 878 | 1054 | IPR006068 | - | |
Sed11g0591 | 1077 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 136 | 1056 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase | 810 | 1058 | - | - | |
Sed11g0591 | 1077 | SMART | Cation_ATPase_N_a_2 | 142 | 216 | IPR004014 | - | |
Sed11g0591 | 1077 | Gene3D | - | 483 | 838 | IPR023214 | - | |
Sed11g0591 | 1077 | Gene3D | - | 496 | 693 | IPR023299 | GO:0000166(InterPro) | |
Sed11g0591 | 1077 | Pfam | E1-E2 ATPase | 263 | 464 | - | - | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase | 46 | 102 | - | - | |
Sed11g0591 | 1077 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 488 | 494 | IPR018303 | - | |
Sed11g0591 | 1077 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Sed11g0591 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 229 | 249 | - | - | |
Sed11g0591 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 479 | 500 | - | - | |
Sed11g0591 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 604 | 622 | - | - | |
Sed11g0591 | 1077 | Pfam | Cation transporter/ATPase, N-terminus | 143 | 211 | IPR004014 | - | |
Sed11g0591 | 1077 | Gene3D | - | 194 | 1050 | - | - | |
Sed11g0591 | 1077 | FunFam | Calcium-transporting ATPase | 687 | 838 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1059 | Sed-Chr1:7912554 | Sed11g0591 | Sed-Chr11:6913248 | 1.00E-99 | dispersed | |
Sed03g2785 | Sed-Chr3:44434066 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
Sed03g2786 | Sed-Chr3:44434066 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
Sed04g2349 | Sed-Chr4:36975916 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
Sed04g2350 | Sed-Chr4:36975916 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
Sed10g1165 | Sed-Chr10:18623604 | Sed11g0591 | Sed-Chr11:6913248 | 5.10E-80 | dispersed | |
Sed11g0591 | Sed-Chr11:6913248 | Sed12g1100 | Sed-Chr12:7159031 | 5.70E-255 | dispersed | |
Sed08g1624 | Sed-Chr8:31373094 | Sed11g0591 | Sed-Chr11:6913248 | 2.20E-280 | transposed | |
Sed11g0591 | Sed-Chr11:6913248 | Sed03g2784 | Sed-Chr3:44434066 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0591 | K01537 | - | csv:101211703 | 1842.78 |