Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0591 ATGAGTTCGTTCAAGGGATCTCCGTACAGAAGACGGAGAGATTTGGAGTCCGGCAGTGCCAATTCCGGCGAGCCGCCGGAGGAGGAGGGGGAGGATGATTCGTCTAATCCTTTTGAAATTTCCAGAACTAAGCATGCTTCTACTGACAGACTCCGCCGCTGGAGACAAGCTGCTCTAGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCCGGGGATCGTCTCAAAGGTCTAGGACTTGCAACAGCCGAAACTCCAAATGGTGATTTTTCAGTTGGGCTAGAGCAACTGGCTGTGTTGGTAAAGGATCGTAATGTTGAAACTCTGGAGCAATATGGAGGGGTTAAAGGGGTTGCAGATAAGTTACAATCGAATTTAGAGAAGGGGATAACTGGTGATGATTTTGATTTGCTGAAACGGAAAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGAAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTACTAGGCATAAAGACTGAGGGTATCGAGGAAGGCTGGTATGACGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTAAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGAGATTGTTGTTGGTGATGTTATTCCCCTCAATATTGGTGACCAGGTCCCTGCTGATGGCATCGTAATTTCTGGACACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGCTAAGGAACCTTTCATGATGTCTGGATGCAAAGTAGCCGACGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAGTGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGCTTAAATGGTGTGGCAACATTAATTGGTATTGTTGGACTCACAGTAGCATTGGCTGTTTTGGTTGTGCTCCTCACGAGGTATTTCACTGGTCATACCCTAAATCCAGATGGAAGTCGTCAGTTTACTGCAGGCAAGACAAGAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATCGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGAGGAGGCTCTCAGCATGTGAGACGATGGGATCTGCTACAACTATTTGTAGTGATAAGACTGGAACTTTGACTATAAACCAGATGACCATTGTTGAGGCTTATGTTGGTGGAAATAAGACTGATCCGCGAGAGAAGAAGCCAGAGTCGTCTTCCATGTTATACTCCATACTTGTTGAAGGAATTGCTCTGAACTCAAATGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGCAGAGGTTACAGGATCACCTACGGAAAAGGCTATCCTTAATTGGGGCATCAAGCTAGGAATGAACTTTGAAGCAATTAGAACAACAACCACGATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGAGTTGCAGGTCAACGGGATGATCAAGTCCATATACACTGGAAAGGTGCTGCTGAGATCGTTTTAGCATCGTGCACACAGTACATGGATGATCATGATCATATTGTCCAATTAGATGAAGATAAGATGAAGTATTTCATGAGAGCTATTGAGGATATGGCTTCTCGTAGTTTACGTTGTGTCGCAATTGCATATAGACCTTTTGAACCTGAGAATGTTCCTGATGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTGGTTTTGTTGGCTATAGTTGGTCTACAGGACCCCTGTCGACCGGGAGTAAAAGATGCAGTGCGACTTTGTCAAAAAGCTGGCATAAAGGTACGCATGGTCACAGGTGATAATGTCCAAACTGCTAGGGCTATTGCATTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAACATTCCGTGCCCTTTCTGATGCCCAAAGAGAAGAAGTTGCTGAGAGAATATCAGTGATGGGTCGGTCGTCTCCCAATGATAAGCTTCTTCTTGTTCAAGCATTGAGAAAAAGAGGACACGTAGTTGCAGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTGGCAATGGGTATCGAGGGGACAGAAGTTGCCAAAGAGAGTTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGTTCAGTATATGCAAACATTCAGAAATTCATCCAGTTTCAGCTTACTGTCAACGTTGCAGCACTCATTATCAATGTCGTAGCAGCAATATCCTCTGGTGATGTCCCATTAAATGCTGTGCAGCTTTTGTGGGTTAACCTTATTATGGACACACTCGGAGCATTAGCGTTGGCTACTGAACCACCTACTGATCACCTCATGGACAGAACGCCAGTTGGTAGAAGAGAACCTCTTATAACAAATATTATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTTGTCCTCAACTTTCGTGGTCGAAGTTTGCTTCATTTGAATCACTCTCATGTGCAAGCTAACAAATTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGCCAAATTTTCAATGAATTTAATGCTCGAAAACCTGATGAGAAGAATATCTTCAAAGGCGTCAATAAAAATTACCTCTTTATTGGGATCGTTGGAATTACAGTTGTTCTCCAGGTGATAATAATAGAATTTTTGGGGAAGTTCACATCCACAGTCAGGCTTAATTGGAAATATTGGATTATTTCCATAATCATCGGCATTATCAGTTGGCCTCTAGCGCTCATTGGGAAATTCATACCTGTTCCTGAAACACCCTTCCATGTGCTCATTATCAGAATGTTCCGTAAGCGACAACCCGAGGCATCTTAA 3234 43.07 MSSFKGSPYRRRRDLESGSANSGEPPEEEGEDDSSNPFEISRTKHASTDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGDRLKGLGLATAETPNGDFSVGLEQLAVLVKDRNVETLEQYGGVKGVADKLQSNLEKGITGDDFDLLKRKNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIEEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYEIVVGDVIPLNIGDQVPADGIVISGHSLAIDESSMTGESKIVQKHAKEPFMMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVALAVLVVLLTRYFTGHTLNPDGSRQFTAGKTRVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGNKTDPREKKPESSSMLYSILVEGIALNSNGSVYVPESGGEAEVTGSPTEKAILNWGIKLGMNFEAIRTTTTILHVFPFSSDKKRGGVAGQRDDQVHIHWKGAAEIVLASCTQYMDDHDHIVQLDEDKMKYFMRAIEDMASRSLRCVAIAYRPFEPENVPDGEEQLSKWALPEDDLVLLAIVGLQDPCRPGVKDAVRLCQKAGIKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKTFRALSDAQREEVAERISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIEGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSHVQANKLKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVNKNYLFIGIVGITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGIISWPLALIGKFIPVPETPFHVLIIRMFRKRQPEAS 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6913248 6932166 + Sed0010376.1 Sed11g0591 729237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0591 1077 CDD P-type_ATPase_Ca_PMCA-like 168 926 - -
Sed11g0591 1077 SFLD Haloacid Dehalogenase 468 845 - -
Sed11g0591 1077 Gene3D - 169 362 - -
Sed11g0591 1077 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1056 IPR023298 -
Sed11g0591 1077 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 690 IPR023299 GO:0000166(InterPro)
Sed11g0591 1077 SFLD p-type atpase 468 845 IPR044492 -
Sed11g0591 1077 Gene3D - 46 102 - -
Sed11g0591 1077 FunFam Calcium-transporting ATPase 194 251 - -
Sed11g0591 1077 SUPERFAMILY Calcium ATPase, transduction domain A 263 359 IPR008250 -
Sed11g0591 1077 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516(InterPro)
Sed11g0591 1077 PANTHER CATION TRANSPORTING ATPASE 93 1056 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed11g0591 1077 FunFam Calcium-transporting ATPase 496 693 - -
Sed11g0591 1077 NCBIfam HAD-IC family P-type ATPase 231 403 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g0591 1077 NCBIfam HAD-IC family P-type ATPase 760 873 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g0591 1077 NCBIfam HAD-IC family P-type ATPase 426 515 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g0591 1077 Pfam haloacid dehalogenase-like hydrolase 484 807 - -
Sed11g0591 1077 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Sed11g0591 1077 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Sed11g0591 1077 PRINTS P-type cation-transporting ATPase superfamily signature 310 324 - -
Sed11g0591 1077 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Sed11g0591 1077 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Sed11g0591 1077 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Sed11g0591 1077 Coils Coil 73 93 - -
Sed11g0591 1077 SUPERFAMILY HAD-like 484 898 IPR036412 -
Sed11g0591 1077 FunFam Calcium-transporting ATPase 9 plasma membrane-type 340 510 - -
Sed11g0591 1077 FunFam Calcium-transporting ATPase 241 362 - -
Sed11g0591 1077 Pfam Cation transporting ATPase, C-terminus 878 1054 IPR006068 -
Sed11g0591 1077 NCBIfam calcium-translocating P-type ATPase, PMCA-type 136 1056 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed11g0591 1077 FunFam Calcium-transporting ATPase 810 1058 - -
Sed11g0591 1077 SMART Cation_ATPase_N_a_2 142 216 IPR004014 -
Sed11g0591 1077 Gene3D - 483 838 IPR023214 -
Sed11g0591 1077 Gene3D - 496 693 IPR023299 GO:0000166(InterPro)
Sed11g0591 1077 Pfam E1-E2 ATPase 263 464 - -
Sed11g0591 1077 FunFam Calcium-transporting ATPase 46 102 - -
Sed11g0591 1077 ProSitePatterns E1-E2 ATPases phosphorylation site. 488 494 IPR018303 -
Sed11g0591 1077 MobiDBLite consensus disorder prediction 1 46 - -
Sed11g0591 1077 PRINTS Sodium/potassium-transporting ATPase signature 229 249 - -
Sed11g0591 1077 PRINTS Sodium/potassium-transporting ATPase signature 479 500 - -
Sed11g0591 1077 PRINTS Sodium/potassium-transporting ATPase signature 604 622 - -
Sed11g0591 1077 Pfam Cation transporter/ATPase, N-terminus 143 211 IPR004014 -
Sed11g0591 1077 Gene3D - 194 1050 - -
Sed11g0591 1077 FunFam Calcium-transporting ATPase 687 838 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1059 Sed-Chr1:7912554 Sed11g0591 Sed-Chr11:6913248 1.00E-99 dispersed
Sed03g2785 Sed-Chr3:44434066 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed03g2786 Sed-Chr3:44434066 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed04g2349 Sed-Chr4:36975916 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed04g2350 Sed-Chr4:36975916 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed10g1165 Sed-Chr10:18623604 Sed11g0591 Sed-Chr11:6913248 5.10E-80 dispersed
Sed11g0591 Sed-Chr11:6913248 Sed12g1100 Sed-Chr12:7159031 5.70E-255 dispersed
Sed08g1624 Sed-Chr8:31373094 Sed11g0591 Sed-Chr11:6913248 2.20E-280 transposed
Sed11g0591 Sed-Chr11:6913248 Sed03g2784 Sed-Chr3:44434066 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0591 K01537 - csv:101211703 1842.78