Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0596 ATGAAGTCGCCGGAGAACGGTGCCGCCGGTGACGTAACATCCACCGCCGCCGCCGGCGTGCCTAATTCTTGCGAAGGTGGATCGGAGAAGATCATAAATCCGGAGCTATGGCAAGCGTGCGCCGGTCCGCTTGTGAACCTGCCGCCGGCCGGTTACCACGTCGTGTATTTTCCTCAAGGTCACAGCGAACAGGTTGCAGCATCTTTGAAGAAAGATGTGGATGCCCAAATCCCAAACTATCCAAATCTTCCTTCCAAGTTATTATGTCTGCTTCATAATGTAACATTACATGCTAACCCTGAAACTGATGAAGTATATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGAACTAGCACTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACGTTGACTCCAAGTGACACGAGCACTCATGGTGGGTTCTCCGTACCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAGCCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATACTGTATGGACTTTCCGTCACATATATCGAGGACAACCAAAGCGTCATCTGCTTACAACCGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTACTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTAGGCATCAGGCGAGCCAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCAAGCGATAGTATGCATATTGGCATTCTTGTAGCCGCTGCCTATGCTGCGGCAAACAATAGCCCTTTCGCCGTTTTCTACAACCCTAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTCTCCACAAGCCAAATATTGCTCGGTATGCGCTTTCGAATGATGTTTGAGACTGAGGAGTCTAGAACAAGAAGATATATGGGCACTATCACTGGTATAAAGGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGCAATCTACAGGTTGGATGGGATGAGTCGTCCAGAGGAGAAAGAAGAAATCGAGTCTCGATATGGGAGATCGAACCTGTTATTGCTCCATTTTTCATTTTCCCCCCTCCTTTTTTGAGATCGAAACATCCGAGGCAACCGGGAATGCCAGATGACGACTCCTTTGATTTGGATGGTCTATTCAAAAGATCAATGTTTGGTGACGATTTTTGTATGAACGATCCACAGGGATATCCTGGCCTAAACTTGGTTCAATGGATGAATATGCAAAACCCTTCGCTCTCTAATTTAATGCAGCCAAATTACATGCACTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGGATGTCAAATACACAAATTCCTCAATCAAACAACATACAGTTTGATGCTCAAAGGTTTCTTTCTCAAGCTCAGCAGTTAGATCAGCTACCTAAGATACCATCGACTATGAACTCAATGGGGTCTGTTGTGCAGCCACCCCAACAGTTGGATGATAAGCCTCAGCTGACACGACAGAATTCTATTAACCAAAATGCGGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCATATTAATGGGATCCTACAGCAACAAACCTGTTTGCGAAACCAGCAGCTTCAGAACTTGCAAATGCAACAGAATCAGCAAATTTTGGGTCAGAATCATCAGCAGAATATGAATCAGCCTCCAATCCCAAGTCAGTTAAATCCACAGTTGCAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAAAAGCTTCAGCAACAGCAGCAATCACTTTTGGCTCAACAGTCTGCTCAACCCACCCAACTCCCGGAACAGCAGAAACAGTTGGTTGATGTGTCCCAAGGCTTTTCCAGGTCCATGTCATCTAACCAAATGCTTGAAATGCCTCAATCTACCCCAGCAGCAACCCCTCTGTCGAACACGTTGCCACAACAGGCAGCAAAGAGTAATAGCCAGACAAATGACCGATTCTCGAATCAGCATTTGCAGCAGAAACTGCCACAGCTACAGAAACCACCTCCATCTAGTATAGTTCCTGATATGTCTAGGCCGATGGGACTTCCTCGAACCCAAACAAACAATCAGCTCTCTGGAGCTACTAGCAGTGTAATAACAGGGGCAGCACGGCTGGGCCAATCTGGAATTACCGACGACATACCATCTTGCTCCATGTCGCCTTCCACGAACAATAGTCCGAGTTTGGTTCAACCAGTAACGAATGGACGGGTTAATCGCAGCACAGGATTGGTTGAGGATGTTGCTCAATCTGCTGTATCAGTCTTCAATCCAAATGCCTTGGATACCATGTCACCAAATGCCAACTTAGTTAATAAAGATTTGCGAAACAAGACTGCTGCTAAACCTTCACTGAATATTTCTAATAACCAAAGTCATGGAATTTTTGCACAACAGACTTTCTTGAATCGCGCTATTTTGCAGACAGATTTCTTGGACACATCGTCCTCCACAACCTCAGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGACGATGTGTAGAGATACTATTCAGGATATGGAAGTACAAACCGATCTTCATAACATACCGTATGGGACTAACATCGACGGACAATTAGTAGCTCGGTATAATTCCGATCCTTTGTTAAACAAGAGCATTAGAGGGTTGGGAAAGGATTTCTCTAATAACTTCTCTTCTGGAGGCATGCTTGCCACATACAATGAACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCACAATCATTTGGTATTCCAGATATGACATTTAATTCCATGGATTCAACGATAAACGACAATGTCTTCTTGAATAACAACCAATGGGCCCCTCCGCCTCAGTTTCAACGCAAGCGAACCTATACCAAGGTGTACAAACGAGGAGCTGTTGGAAGATCTATTGATATTACTCGTTATTCGGGTTATGATGAGCTTAAGCAAGACCTCGCCCATAGGTTTGGTATCGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTTGTATATGTGGATCATGAAAATGATGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGCGTACGAAGCATCAAGATCCTCTCCCCACAGGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGTAACGGGGTCGTACCGAACCAAGCTTGCAGTAGCTCGGATGGTGGAAATGCATAA 3309 44.79 MKSPENGAAGDVTSTAAAGVPNSCEGGSEKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHANPETDEVYAQMTLQPVPSFDKDALLRSELALKSNKPQPEFFCKTLTPSDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILVAAAYAAANNSPFAVFYNPRASPSEFVIPLAKYYKAVSTSQILLGMRFRMMFETEESRTRRYMGTITGIKDLDPVRWKGSQWRNLQVGWDESSRGERRNRVSIWEIEPVIAPFFIFPPPFLRSKHPRQPGMPDDDSFDLDGLFKRSMFGDDFCMNDPQGYPGLNLVQWMNMQNPSLSNLMQPNYMHSFSGSMLPNLGGVDISRQLGMSNTQIPQSNNIQFDAQRFLSQAQQLDQLPKIPSTMNSMGSVVQPPQQLDDKPQLTRQNSINQNAVSSQIQAQIMQQPHINGILQQQTCLRNQQLQNLQMQQNQQILGQNHQQNMNQPPIPSQLNPQLQMSDNQVQMQMLQKLQQQQQSLLAQQSAQPTQLPEQQKQLVDVSQGFSRSMSSNQMLEMPQSTPAATPLSNTLPQQAAKSNSQTNDRFSNQHLQQKLPQLQKPPPSSIVPDMSRPMGLPRTQTNNQLSGATSSVITGAARLGQSGITDDIPSCSMSPSTNNSPSLVQPVTNGRVNRSTGLVEDVAQSAVSVFNPNALDTMSPNANLVNKDLRNKTAAKPSLNISNNQSHGIFAQQTFLNRAILQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQTMCRDTIQDMEVQTDLHNIPYGTNIDGQLVARYNSDPLLNKSIRGLGKDFSNNFSSGGMLATYNEQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNVFLNNNQWAPPPQFQRKRTYTKVYKRGAVGRSIDITRYSGYDELKQDLAHRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVVPNQACSSSDGGNA 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7021279 7030670 + Sed0021918.1 Sed11g0596 729242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0596 1102 Gene3D - 137 240 IPR015300 -
Sed11g0596 1102 Gene3D - 986 1079 - -
Sed11g0596 1102 CDD B3_DNA 138 230 IPR003340 GO:0003677(InterPro)
Sed11g0596 1102 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677(InterPro)
Sed11g0596 1102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 1081 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed11g0596 1102 MobiDBLite consensus disorder prediction 622 726 - -
Sed11g0596 1102 Pfam AUX/IAA family 987 1075 IPR033389 -
Sed11g0596 1102 SUPERFAMILY DNA-binding pseudobarrel domain 129 267 IPR015300 -
Sed11g0596 1102 ProSiteProfiles PB1 domain profile. 990 1075 IPR053793 -
Sed11g0596 1102 SMART B3_2 139 241 IPR003340 GO:0003677(InterPro)
Sed11g0596 1102 FunFam Auxin response factor 137 241 - -
Sed11g0596 1102 FunFam Auxin response factor 985 1079 - -
Sed11g0596 1102 Pfam Auxin response factor 265 348 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed11g0596 1102 FunFam Auxin response factor 303 374 - -
Sed11g0596 1102 MobiDBLite consensus disorder prediction 1 20 - -
Sed11g0596 1102 SUPERFAMILY CAD & PB1 domains 1003 1069 - -
Sed11g0596 1102 Pfam B3 DNA binding domain 139 241 IPR003340 GO:0003677(InterPro)
Sed11g0596 1102 Gene3D - 303 373 - -
Sed11g0596 1102 MobiDBLite consensus disorder prediction 622 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1842 Sed-Chr3:12209425 Sed11g0596 Sed-Chr11:7021279 1.30E-233 dispersed
Sed03g1843 Sed-Chr3:12209425 Sed11g0596 Sed-Chr11:7021279 1.30E-233 dispersed
Sed11g0596 Sed-Chr11:7021279 Sed14g1598 Sed-Chr14:24132416 8.10E-164 dispersed
Sed11g0596 Sed-Chr11:7021279 Sed11g0597 Sed-Chr11:7025012 0.00E+00 tandem
Sed11g0596 Sed-Chr11:7021279 Sed03g2774 Sed-Chr3:44251030 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39907 PF02309 AUX_IAA 7.40E-08 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0596 - - - 0.0