Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0597 ATGCATATTGGCATTCTTGTAGCCGCTGCCTATGCTGCGGCAAACAATAGCCCTTTCGCCGTTTTCTACAACCCTAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTCTCCACAAGCCAAATATTGCTCGGTATGCGCTTTCGAATGATGTTTGAGACTGAGGAGTCTAGAACAAGAAGATATATGGGCACTATCACTGGTATAAAGGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGCAATCTACAGGTTGGATGGGATGAGTCGTCCAGAGGAGAAAGAAGAAATCGAGTCTCGATATGGGAGATCGAACCTGTTATTGCTCCATTTTTCATTTTCCCCCCTCCTTTTTTGAGATCGAAACATCCGAGGCAACCGGGAATGCCAGATGACGACTCCTTTGATTTGGATGGTCTATTCAAAAGATCAATGTTTGGTGACGATTTTTGTATGAACGATCCACAGGGATATCCTGGCCTAAACTTGGTTCAATGGATGAATATGCAAAACCCTTCGCTCTCTAATTTAATGCAGCCAAATTACATGCACTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGGATGTCAAATACACAAATTCCTCAATCAAACAACATACAGTTTGATGCTCAAAGGTTTCTTTCTCAAGCTCAGCAGTTAGATCAGCTACCTAAGATACCATCGACTATGAACTCAATGGGGTCTGTTGTGCAGCCACCCCAACAGTTGGATGATAAGCCTCAGCTGACACGACAGAATTCTATTAACCAAAATGCGGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCATATTAATGGGATCCTACAGCAACAAACCTGTTTGCGAAACCAGCAGCTTCAGAACTTGCAAATGCAACAGAATCAGCAAATTTTGGGTCAGAATCATCAGCAGAATATGAATCAGCCTCCAATCCCAAGTCAGTTAAATCCACAGTTGCAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAAAAGCTTCAGCAACAGCAGCAATCACTTTTGGCTCAACAGTCTGCTCAACCCACCCAACTCCCGGAACAGCAGAAACAGTTGGTTGATGTGTCCCAAGGCTTTTCCAGGTCCATGTCATCTAACCAAATGCTTGAAATGCCTCAATCTACCCCAGCAGCAACCCCTCTGTCGAACACGTTGCCACAACAGGCAGCAAAGAGTAATAGCCAGACAAATGACCGATTCTCGAATCAGCATTTGCAGCAGAAACTGCCACAGCTACAGAAACCACCTCCATCTAGTATAGTTCCTGATATGTCTAGGCCGATGGGACTTCCTCGAACCCAAACAAACAATCAGCTCTCTGGAGCTACTAGCAGTGTAATAACAGGGGCAGCACGGCTGGGCCAATCTGGAATTACCGACGACATACCATCTTGCTCCATGTCGCCTTCCACGAACAATAGTCCGAGTTTGGTTCAACCAGTAACGAATGGACGGGTTAATCGCAGCACAGGATTGGTTGAGGATGTTGCTCAATCTGCTGTATCAGTCTTCAATCCAAATGCCTTGGATACCATGTCACCAAATGCCAACTTAGTTAATAAAGATTTGCGAAACAAGACTGCTGCTAAACCTTCACTGAATATTTCTAATAACCAAAGTCATGGAATTTTTGCACAACAGACTTTCTTGAATCGCGCTATTTTGCAGACAGATTTCTTGGACACATCGTCCTCCACAACCTCAGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGACGATGTGTAGAGATACTATTCAGGATATGGAAGTACAAACCGATCTTCATAACATACCGTATGGGACTAACATCGACGGACAATTAGTAGCTCGGTATAATTCCGATCCTTTGTTAAACAAGAGCATTAGAGGGTTGGGAAAGGATTTCTCTAATAACTTCTCTTCTGGAGGCATGCTTGCCACATACAATGAACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCACAATCATTTGGTATTCCAGATATGACATTTAATTCCATGGATTCAACGATAAACGACAATGTCTTCTTGAATAACAACCAATGGGCCCCTCCGCCTCAGTTTCAACGCAAGCGAACCTATACCAAGGTGTACAAACGAGGAGCTGTTGGAAGATCTATTGATATTACTCGTTATTCGGGTTATGATGAGCTTAAGCAAGACCTCGCCCATAGGTTTGGTATCGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTTGTATATGTGGATCATGAAAATGATGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGCGTACGAAGCATCAAGATCCTCTCCCCACAGGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGTAACGGGGTCGTACCGAACCAAGCTTGCAGTAGCTCGGATGGTGGAAATGCATAA 2541 44.04 MHIGILVAAAYAAANNSPFAVFYNPRASPSEFVIPLAKYYKAVSTSQILLGMRFRMMFETEESRTRRYMGTITGIKDLDPVRWKGSQWRNLQVGWDESSRGERRNRVSIWEIEPVIAPFFIFPPPFLRSKHPRQPGMPDDDSFDLDGLFKRSMFGDDFCMNDPQGYPGLNLVQWMNMQNPSLSNLMQPNYMHSFSGSMLPNLGGVDISRQLGMSNTQIPQSNNIQFDAQRFLSQAQQLDQLPKIPSTMNSMGSVVQPPQQLDDKPQLTRQNSINQNAVSSQIQAQIMQQPHINGILQQQTCLRNQQLQNLQMQQNQQILGQNHQQNMNQPPIPSQLNPQLQMSDNQVQMQMLQKLQQQQQSLLAQQSAQPTQLPEQQKQLVDVSQGFSRSMSSNQMLEMPQSTPAATPLSNTLPQQAAKSNSQTNDRFSNQHLQQKLPQLQKPPPSSIVPDMSRPMGLPRTQTNNQLSGATSSVITGAARLGQSGITDDIPSCSMSPSTNNSPSLVQPVTNGRVNRSTGLVEDVAQSAVSVFNPNALDTMSPNANLVNKDLRNKTAAKPSLNISNNQSHGIFAQQTFLNRAILQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQTMCRDTIQDMEVQTDLHNIPYGTNIDGQLVARYNSDPLLNKSIRGLGKDFSNNFSSGGMLATYNEQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNVFLNNNQWAPPPQFQRKRTYTKVYKRGAVGRSIDITRYSGYDELKQDLAHRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVVPNQACSSSDGGNA 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7025012 7030670 + Sed0021918.2 Sed11g0597 729243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0597 846 MobiDBLite consensus disorder prediction 366 442 - -
Sed11g0597 846 Pfam AUX/IAA family 731 819 IPR033389 -
Sed11g0597 846 MobiDBLite consensus disorder prediction 366 470 - -
Sed11g0597 846 Pfam Auxin response factor 9 92 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed11g0597 846 FunFam Auxin response factor 47 118 - -
Sed11g0597 846 FunFam Auxin response factor 729 823 - -
Sed11g0597 846 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 825 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed11g0597 846 SUPERFAMILY CAD & PB1 domains 747 813 - -
Sed11g0597 846 Gene3D - 730 823 - -
Sed11g0597 846 Gene3D - 47 117 - -
Sed11g0597 846 ProSiteProfiles PB1 domain profile. 734 819 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2774 Sed-Chr3:44251030 Sed11g0597 Sed-Chr11:7025012 0.00E+00 dispersed
Sed11g0597 Sed-Chr11:7025012 Sed14g1598 Sed-Chr14:24132416 3.90E-65 dispersed
Sed11g0596 Sed-Chr11:7021279 Sed11g0597 Sed-Chr11:7025012 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0597 - - - 0.0