Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0602 ATGGCTTGCTCTTCAACAAAATCTAGTGCTTTTCTCTCTATCTCAACAATGCTTCTTGTTTCTGTTGTTAACAAGTTCATATTCCCAATTTCTCCATTTACTTTTGGAGTCACCATCTTCCTTGTTCCTCTCCTTACTTACATCATCTCTTCCATTGCCTTCTCCTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATTTTTGGCAACTGGCTCCAAGTTGGAAATGACCTAAACCATCGCCTTCTCGCTTCCTTCTGCAAGCGATTCGGCTCGATCTTTCTCTTGAAGCTCGGCTCTAAAAACCTCGTTGTTGTGTCTGATGCTGAACTTGCTAGCCAGGTTCTCCATGCCCAGGGTGTGGAGTTTGGTTCCCGTCCTAGGAATGTTGTGTTTGATATCTTCACTGGAAACGGTCAGGATATGGTGTTTACTGTTTATGGGGACCATTGGCGTAAGATGCGTAGAATCATGACATTGCCATTTTTCACGAATAAGGTGGTGCACAACTATAGTGGCATGTGGGAGGATGAGATGGACTCCGTGGTTTGTGATCTTAAAAGTAACAAGAAATTTCAAACGGAAGGGATAGTGATCAGAAAACGCTTGCAATTGATGTTGTACAACATCATGTATAGAATGATGTTTGATGCTAAGTTTGAGTCTCAAGATGATCCTTTGTTCATCGAAGCTACTCGTTTCAACTCAGAACGAAGTCGATTAGCACAAAGCTTTGAATACAACTATGGAGATTTCATTCCTTTGTTGAGACCTTTCTTAAGAGGCTACTTGAACAAGTGTAAAGATTTGCAGAGTAGGAGGTTGAATTTTTTCAACAAAAACTACGTTGAGAAAAGAAGGGAGATAATGGCTATTAATGGAGATAAACACAAGATAACATGCGCAATGGATCATATAATAGACGCTCAATTGAAAGGTGAGATTAGTGAAGCGAATGTGATTTACATTGTGGAAAACATCAACGTAGCAGCGATAGAAACAACACTATGGTCGATGGAATGGGCAATAGCAGAGCTGGTGAATCATCCAAAAATTCAACAAAAGATTCGAGATGAATTAAAGAGCGTCCTTAAAGGAAAGGAAGTGACTGAATCTAACCTTCATGAGTTACCATATTTGCAAGCAACAGTGAAAGAGACACTAAGGTTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTGAAGGAGGAAAAACTTGGAGGATTCACCATCCCTAAGGAATCCAAGGTGGTAGTAAATGCATGGTGGCTAGCCAACAACCCTGAGTGGTGGAAGAATCCAGAAGAGTTTAGGCCGGAAAGATTCTTCGAAGAAGAAAGTGGGATTGAAGCTGTTGCTGCAGGAAAAGTGGATTACAGATTCTTACCATTTGGAGTAGGAAGGAGGAGTTGTCCTGGACTTGTTTTAGCCATGCCAATTTTAGGCCTCATCGTTGCTAAATTGGTTTCTAGGTTTGAAATGAAGCCTCCTAGTGGAATGGACAAGATTGATGTCACGGAGAAAGGAGGACAATTCAGTCTGCATATCGCCAACCACTCAACCGTTGTTTTTAAGCAAATAATTGCATAA 1596 41.48 MACSSTKSSAFLSISTMLLVSVVNKFIFPISPFTFGVTIFLVPLLTYIISSIAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASFCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDSVVCDLKSNKKFQTEGIVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLNFFNKNYVEKRREIMAINGDKHKITCAMDHIIDAQLKGEISEANVIYIVENINVAAIETTLWSMEWAIAELVNHPKIQQKIRDELKSVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLKEEKLGGFTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGIEAVAAGKVDYRFLPFGVGRRSCPGLVLAMPILGLIVAKLVSRFEMKPPSGMDKIDVTEKGGQFSLHIANHSTVVFKQIIA 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7066949 7068610 - Sed0002861.1 Sed11g0602 729248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0602 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed11g0602 531 Gene3D Cytochrome P450 53 525 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 40 529 - GO:0004497(PANTHER)
Sed11g0602 531 FunFam Trans-cinnamate 4-monooxygenase 50 523 - -
Sed11g0602 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 SUPERFAMILY Cytochrome P450 59 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0602 531 Pfam Cytochrome P450 59 520 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2772 Sed-Chr3:44204960 Sed11g0602 Sed-Chr11:7066949 1.50E-256 dispersed
Sed04g0239 Sed-Chr4:1778320 Sed11g0602 Sed-Chr11:7066949 3.30E-181 dispersed
Sed05g3340 Sed-Chr5:42700154 Sed11g0602 Sed-Chr11:7066949 2.60E-189 dispersed
Sed11g0599 Sed-Chr11:7034884 Sed11g0602 Sed-Chr11:7066949 8.00E-82 dispersed
Sed11g0600 Sed-Chr11:7042090 Sed11g0602 Sed-Chr11:7066949 3.10E-128 dispersed
Sed11g0602 Sed-Chr11:7066949 Sed10g0896 Sed-Chr10:6817737 9.60E-62 dispersed
Sed11g0601 Sed-Chr11:7062074 Sed11g0602 Sed-Chr11:7066949 2.00E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0602 K00487 - csv:101204747 981.089