Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0662 ATGGCCACTCTTTCCTGTGAGCCTTCCGATTTGGCGTCGCTTCTCGGCTCATCAGCCAATTCGACCGCCGTAGCTGAGTTTCTATGCTCGAAAATCAACATCGTCGCCACCACTTTTACCACCACAACTTACGCCATCGACAACACCTATCTCCTCTTCTCCGCCTACCTTGTGTTCGCTATGCAGCTCGGTTTTGCCATGCTTTGTGCTGGCTCGGTCCGGGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCAGCCGCTGGCGGCCTCTCGTACTACCTCTTCGGGTTCGCCTTCGCCTTTGGTGCCCCCTCCAACTCCTTCATTGGCCGCCATTTTTTTGGCCTTTCCAGTTTCCCTGACCCGTCTAAGGATTATAGCTTCTTTCTTTACCAATGGGCCTTTGCTATTGCTGCTGCAGGTATCACAAGTGGTTCGATAGCTGAGAGAACTCAATTTGTAGCCTACCTCATCTACTCCACAGTTTTAACCGGTTTCGTTTACCCTACGGTTTCTCACTGGTTCTGGTCTGGCGACGGCTGGGCCAGCCCAACCCGATCAAACAGCCTTCTCTTCAACTCCGGTGCAATCGACTTTGCCGGGTCGGGCGTAGTCCACATGGTCGGTGGCATAGCCGGCCTATGGGGTGCCTTGATTGAAGGCCCTAGAATCGGCCGGTTCGACCGCTCGGGCCGTTCCATTGCCCTCCGTGGCCATAGCGCATCCTTAGTAGTTCTCGGCTCCTTCCTCCTCTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCCTAACCATCTCAAAATCCTACAACGATGGTCGGCCCTACTACGGTCAATGGAGCGCAATAGGCCGAACCGGAGTCACCACAACACTAGCCGGATGCACAGCCGCCCTAACAACTCTCTTCACAAAGCGTCTACTAGTAGGCCATTGGAACGTAATCGACGTATGCAACGGCCTCTTAGGCGGGTTCGCAGCCATCACATCCGGATGCGCCGTGGTCGAGCCATGGGCCGCAGTGATATGCGGGTTCGTAGCATCGTTCGTCCTAACCGGGTTCAACAAGCTAGCCGAAAAGGTGAGCTACGACGACCCGTTGGAGGCGGCGCAGCTGCACGGCGGGTGCGGCGCGTGGGGGCTGATATTCACAGGGCTGTTTGCGACAAAGGAGTACGTGGCGGAAGTGTACAGCCCGGGGAGACCGTACGGGCTGTTCATGGGCGGGGGAGGGAGGCTGCTGGGGGCGCAGGTGGTGGAGATAGCATCCATTGTGGGGTGGGTGTCCGTGACCATGGGGGCCTTGTTTTATGGGCTCAAGAAGGCCAAATTGCTTAGGATTTCAAGGGAGGATGAGATGGCGGGGATGGATCTGACTAGGCATGGAGGGTTTGCTTACGTGTACAATGAAGAGGATGACATGTCAGGCAAGCCAGCTGGGTTTATGATGACTAGGATTGGACCTGCTGATGGGAGTCCCACTCCTGAGGGTTGTAGTCCGACTGGGATGGCTGTTGTTTGA 1533 55.97 MATLSCEPSDLASLLGSSANSTAVAEFLCSKINIVATTFTTTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSSFPDPSKDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPTVSHWFWSGDGWASPTRSNSLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSIALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASFVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFATKEYVAEVYSPGRPYGLFMGGGGRLLGAQVVEIASIVGWVSVTMGALFYGLKKAKLLRISREDEMAGMDLTRHGGFAYVYNEEDDMSGKPAGFMMTRIGPADGSPTPEGCSPTGMAVV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8674279 8677888 + Sed0010748.1 Sed11g0662 729308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0662 510 Pfam Ammonium Transporter Family 50 470 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed11g0662 510 FunFam Ammonium transporter 28 485 - -
Sed11g0662 510 PANTHER AMMONIUM TRANSPORTER 20 476 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Sed11g0662 510 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed11g0662 510 NCBIfam ammonium transporter 47 470 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed11g0662 510 Gene3D Ammonium transporter AmtB like domains 27 484 IPR029020 -
Sed11g0662 510 SUPERFAMILY Ammonium transporter 44 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4255 Sed-Chr1:70843129 Sed11g0662 Sed-Chr11:8674279 3.90E-203 dispersed
Sed05g0155 Sed-Chr5:939671 Sed11g0662 Sed-Chr11:8674279 3.80E-206 dispersed
Sed11g0662 Sed-Chr11:8674279 Sed09g0197 Sed-Chr9:1585433 7.50E-205 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0662 K03320 - csv:101222356 855.129