Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0715 ATGGGTTCTATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACCATCCGACCACTCTCACGGAGGCGCCGCTGCCCCCTTCCCCTCCGACGACATCTCCGGCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCCTATGGCGTATATGAACCCTTCAACCTCAATAATCACTCTCAAGATTGGAACAATATGAAGGGGCTAGGGTCGACTCAAAGTTCGGATTTTTCTGCCTTGGTGGAAACCCACCACCAACCAAAGCTTGAAAATTTCTTTGGCCACCACTCTTTCACCGACCACGACCATGCCGCCGCCGCCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTCTTCCTTGGAACTTCCATCAACTCAGGCAAGCGATGGAAAAGCCAACGCCGGTAATGGTAACGGCAGCGATAACGGTAACGGAAACAACAGTAATAGCTCTATTGGGTTATCGATGATCAAGACATGGCTGAGGAATCAACCGGCGCCGATGCAAGCTGCTGCAAAGAGTGGCGGAGATCAGGACGATGCGATTAGATCTGCTAGTATCACAAACGCACATACTTTATCGCTGTCGATGAGCACCGGGCCATTGCCACTGTCTCAGTCCTCCTGCTCCGGAGCTCTGCCACTTCTCACAGCAAGCGGCGGGGAAAGCTCCTCCTCCGATAACAAACAACCCAAATCGGCAGCTGCTGAACTTGACGCTGAAAGCGGCGCCATTGAAGCTGTCCCCAGAAAATCTGTCGATACATTCGGCCAAAGAACTTCCATTTACCGCGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCACATCTATGGGACAATAGTTGCAGAAGAGAAGGGCAGACAAGAAAAGGGAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCAGCACTTAAATACTGGGGTACCACAACCACAACTAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCAGGCAAGAGTTTGTTGCGTCTCTCAGAAGGAAGAGTAGTGGATTTTCTCGAGGAGCTTCCATTTACCGTGGAGTAACGAGACACCATCAACATGGGAGATGGCAAGCAAGAATAGGAAGAGTTGCTGGGAATAAAGATCTCTACTTGGGAACATTCAGCACACAAGAGGAAGCAGCCGAGGCTTATGACATAGCGGCCATAAAATTTCGAGGACTTAACGCAGTGACCAACTTTGACATGAACCGTTATGACGTCAAAGCAATTCTTGAAAGCAACACATTACCAATTGGTGGCGCTACAAAGCGCTTAAAAGAAATTGACCACTCCGAAATCCCCCTTGACCCACAACGAAGCGACATGAACATAACCCCACACCTCTCGGATGCAATAACCACCACCACCACCCCTTACGGTGGTGGTGGATGGCCAGCTCTCGCCTTCCACCATCATCACCCTTATGCAATTCCCTATTCCTATGCTGCCCCACAACAGCGGTTATGGTGCAAGCAAGAGCCCGACTCGACTATCACTGCTTCAGATAACTTCTTTCCGCATGGCAACGCCATGGACTCAATGGATCACAGCTCGGGGTCGAGCTCTGTGGTTTACAGCGGTGGCAGTGGAGACGGGTATAGTGGGAACTTTCTAATACCGATGGGGGCGGCAGGAGCGGAAGGGAGTAGCAACAATGGTGGATTGGGAGATATTGGAGAAGTGAATTTGTTTGTTGGTTCTAACATGGATGGTCCATACCATGCAACAAGGACGTCCAATTTGTATAATTATCATGATTCCTCTCATCAGCTACAACCGCCTCCGGTACCGGTGCTGCAAGGCTCAGCCTGGCTTCCACCTGCCAGGTCGGTTTGCCATGGAGGAGCGCCGCCGCCTTTCACGATTTGGAATGACACTTGA 1941 49.87 MGSMNWLGFSLSPQEQPSDHSHGGAAAPFPSDDISGSAVCFDNLPSSYGVYEPFNLNNHSQDWNNMKGLGSTQSSDFSALVETHHQPKLENFFGHHSFTDHDHAAAAYTNASANYMFQNSSLELPSTQASDGKANAGNGNGSDNGNGNNSNSSIGLSMIKTWLRNQPAPMQAAAKSGGDQDDAIRSASITNAHTLSLSMSTGPLPLSQSSCSGALPLLTASGGESSSSDNKQPKSAAAELDAESGAIEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGATKRLKEIDHSEIPLDPQRSDMNITPHLSDAITTTTTPYGGGGWPALAFHHHHPYAIPYSYAAPQQRLWCKQEPDSTITASDNFFPHGNAMDSMDHSSGSSSVVYSGGSGDGYSGNFLIPMGAAGAEGSSNNGGLGDIGEVNLFVGSNMDGPYHATRTSNLYNYHDSSHQLQPPPVPVLQGSAWLPPARSVCHGGAPPPFTIWNDT 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10510413 10515474 - Sed0019295.1 Sed11g0715 729361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0715 646 ProSiteProfiles AP2/ERF domain profile. 264 327 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 CDD AP2 263 329 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 MobiDBLite consensus disorder prediction 217 234 - -
Sed11g0715 646 SUPERFAMILY DNA-binding domain 263 329 IPR016177 GO:0003677(InterPro)
Sed11g0715 646 SMART rav1_2 264 333 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 SMART rav1_2 363 427 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 MobiDBLite consensus disorder prediction 1 19 - -
Sed11g0715 646 ProSiteProfiles AP2/ERF domain profile. 363 421 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 SUPERFAMILY DNA-binding domain 362 422 IPR016177 GO:0003677(InterPro)
Sed11g0715 646 PRINTS Ethylene responsive element binding protein signature 403 423 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 CDD AP2 362 421 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 MobiDBLite consensus disorder prediction 217 245 - -
Sed11g0715 646 FunFam AP2-like ethylene-responsive transcription factor ANT 263 329 - -
Sed11g0715 646 Pfam AP2 domain 364 413 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 203 456 - -
Sed11g0715 646 MobiDBLite consensus disorder prediction 1 28 - -
Sed11g0715 646 Gene3D AP2/ERF domain 363 423 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 Gene3D AP2/ERF domain 264 329 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0715 646 MobiDBLite consensus disorder prediction 124 153 - -
Sed11g0715 646 FunFam AP2-like ethylene-responsive transcription factor 362 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1127 Sed-Chr5:11131304 Sed11g0715 Sed-Chr11:10510413 6.70E-101 dispersed
Sed11g0715 Sed-Chr11:10510413 Sed12g2212 Sed-Chr12:32535371 1.60E-98 dispersed
Sed11g0715 Sed-Chr11:10510413 Sed07g1816 Sed-Chr7:20566170 4.80E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39915 PF00847 AP2 3.40E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0715 K09285 - csv:101219473 958.747