Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0724 ATGGCCATGGCTATGGCCCATAACAGAGAGAGTAGCGATGGGGGTATCAATGGTCACCTTGACAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTCTATGCTGAATGTCCAAAACCGAGCTCGTTGCGCTGCCAGCAGCTGGTTCGGGATTGCCCCATTTTATCTAACATTGAGCCAAAACAGATCAAAGTCTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGCTTACAGTCATTGAACAGTAGATTGACGGCCATGAACAAGCTCATGATGGAGGAGAATGATAGGTTGCAAAAACAAGTGTCTCAGCTCGTCTGTGAGAATGGTTATATGCGGCAACAATTGCAAACTGCTAATGCACCAGCAGCACCAATTACAGATGCAATTTGTGACTCTGTGGCTACTACCCCTCAGCATTCACTTAAAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGTCTTCCTGTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTGGGAATCTTCACCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTCAGTTTAGAGCCCACAAAGATTGCAGAGATCCTAAAAGATCGCTCATCTTGGTTTCGTGATTGCCGGAGTCTTGAAGTTTTTACAACGTTGCCTACTTGTAATAGTGGGACAATTGAACTTGTTTATACGCAGGTTTATGCTCCTACTACATTAGCGCCTGCACGAGATTTTTGGACTCTAAGATACACCAAAATTTTGAAAAATGGAAATCTTGTGGTTTGTGAGAGATCGCTGTCTGGATCTGGCACTGGCCCTAATGCAGCTTCTGCTGCTCAGTTTGTGAGAGCTGAAATGCTTCCCAGTGGCTACTTGATTCGTTCGTGCGATGGTGGAGGTTCAATCATCCACATTGTAGATCACCTAAATCTGGAGCCTTGGAGCGTGCCAGAGTTAGTACGACCACTTTACGAGTCGTCGAAGGCCGTTGCTCAGAAAATGACCATAGCAGCTCTTCGCTATGTAAGGCAAATTGCCCAAGAGACAAGTGGTGAAGTAGTATACAGTTTAGGCAGGCAACCAGCCGTTCTTCGAACTTTTAGCCAAAGATTGAGCAGAGGATTTAATGATGCTATCAATGGATTCAATGATGATGGGTGGTCTTTGATTAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATTTGAAGACATCATATGATCCAATCAACCCTGGTGCATTCCATGGTGGTGTCCTGTGTGCTAAAGCTTCCATGCTTCTCCAAAATGTTCCTCCCATTGCTCTAATTCACTTCTTGAGGGAGCATCGTTCCGAGTGGGCCGATTACAATGTGGATGCCTATTCTGCTGCATCATTGAAAACTGGTTCATATGCATACCCGGGCATGAGACCGACTAGGTTTACAGGTAGCCAAATCATCATGCCGCTTGGCCATACGATTGAAAAGGAAGAGTTGCTTGAAGTTGTAAGGCTTGAGAGCCACCCTTTTTCGCAAGAAGATACTTTTATGTCACAGGACGTTCATCTGTTGCAGATGTGTACTGGAATCGACAAGAATGCTGTTGGGGCATGTTCCGAACTTGTGTTTGCTCCGATTGATGAGATGTTTCCTGATGATGCTGTGCTGTTGCCTTCTGGTTTCAGGGTCATCCCTCTACATTCTAAAACAGGTGATCCAAAAGGTACATGGAATTCAAATAAAACTTTAGATCTCACTTCCAGTCTTGAAGTTGGCTCATCTGCTTCCCAAGATGCTTCTGCATCAACATCTAACTTCAGATCAGTTTTGACCATTGCCTTCCAGTTCCCATTCGGTAGCAACCTGCAGGATGATGTTGTAGCGATGGCGAGACAGTATGTTCGGAGTGTCATTTCAGCTGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTCGATTAAGCTCATCGTCAGAACCAAAGCTATCACCTGCTTGTCCAGAAGCTCTTACACTGGCTAGATGGATCTGCCATAGCTACAGATGCCATACTGGAACAGAATTGGTGCCATCAGACAGTCTGGATGGTGACTCAGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTCTGCTGTTCCCTCAAGTCAATGCCCCCGGTGTTCATGTTTGCAAACCAAGCAGGCCTCGACATGTTGGAGACAACCTTGGTTGCCTTACAAGACATCACTTTGGATAAGATTCTCGGCGACTCTGCCCGCAGGGCTTTCTCTGCTGATTTTTCAAACTTAATGCACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCCACAATGGGGCGTCATGCTTCCTTTGACCAAGCCATTGCATGGAAGGTTCTTGCAGAAGACGAGTCTACCGTGCACTGTCTCGCCTTCTCCTTTGTCAACTGGTCGTTCCTGTGA 2538 46.69 MAMAMAHNRESSDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRCQQLVRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQSLNSRLTAMNKLMMEENDRLQKQVSQLVCENGYMRQQLQTANAPAAPITDAICDSVATTPQHSLKDASSPAGLLSIAEEILAVFLSKATGTAVDWVQMPGMKPGPDSVGIFTISQSCSGVAARACGLVSLEPTKIAEILKDRSSWFRDCRSLEVFTTLPTCNSGTIELVYTQVYAPTTLAPARDFWTLRYTKILKNGNLVVCERSLSGSGTGPNAASAAQFVRAEMLPSGYLIRSCDGGGSIIHIVDHLNLEPWSVPELVRPLYESSKAVAQKMTIAALRYVRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAINGFNDDGWSLINCDGAEDVTLAINSSKNLKTSYDPINPGAFHGGVLCAKASMLLQNVPPIALIHFLREHRSEWADYNVDAYSAASLKTGSYAYPGMRPTRFTGSQIIMPLGHTIEKEELLEVVRLESHPFSQEDTFMSQDVHLLQMCTGIDKNAVGACSELVFAPIDEMFPDDAVLLPSGFRVIPLHSKTGDPKGTWNSNKTLDLTSSLEVGSSASQDASASTSNFRSVLTIAFQFPFGSNLQDDVVAMARQYVRSVISAVQRVAVAISPSRLSSSSEPKLSPACPEALTLARWICHSYRCHTGTELVPSDSLDGDSVLKHLWNHQDAILCCSLKSMPPVFMFANQAGLDMLETTLVALQDITLDKILGDSARRAFSADFSNLMHQGFAYIPAGICMSTMGRHASFDQAIAWKVLAEDESTVHCLAFSFVNWSFL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11107502 11116417 - Sed0025409.1 Sed11g0724 729370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0724 845 CDD START_ArGLABRA2_like 161 377 - -
Sed11g0724 845 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Sed11g0724 845 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Sed11g0724 845 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Sed11g0724 845 Gene3D - 199 383 IPR023393 -
Sed11g0724 845 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Sed11g0724 845 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Sed11g0724 845 Coils Coil 90 121 - -
Sed11g0724 845 CDD bZIP 77 116 - -
Sed11g0724 845 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Sed11g0724 845 MobiDBLite consensus disorder prediction 1 20 - -
Sed11g0724 845 Pfam MEKHLA domain 700 844 IPR013978 -
Sed11g0724 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 845 IPR044830 GO:0003700(InterPro)
Sed11g0724 845 Gene3D - 19 91 - -
Sed11g0724 845 SUPERFAMILY Bet v1-like 166 378 - -
Sed11g0724 845 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Sed11g0724 845 Pfam START domain 167 375 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1848 Sed-Chr3:12332652 Sed11g0724 Sed-Chr11:11107502 0.00E+00 dispersed
Sed05g2848 Sed-Chr5:39624512 Sed11g0724 Sed-Chr11:11107502 0.00E+00 dispersed
Sed05g2849 Sed-Chr5:39624512 Sed11g0724 Sed-Chr11:11107502 0.00E+00 dispersed
Sed11g0724 Sed-Chr11:11107502 Sed14g1616 Sed-Chr14:24352331 0.00E+00 dispersed
Sed11g0724 Sed-Chr11:11107502 Sed14g1615 Sed-Chr14:24352331 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39916 PF01852 START 1.50E-45 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0724 K09338 - rcu:8266275 1340.1