Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0732 | ATGATTTCAAATTCTCAATTGCTCTCTCTTCCTTCACAACATGATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTTTCTTCTGATTCTCATTCAAGCTCTCTCCTTTACAACCTCTCAATTTTGAAAGAGAAACTCCACCAAATCCAATCGGTCGTCAACGTCGTCGTCTGTAACTACCAGGGCTCGACTGAATCCCCACCCCCGCCTCTGTCTCCCATGTCCACTGCAGCTATCAACTCTTTGATCCAAGACCTCATTATGGCTGCTTCCTCTATGTTGTTCACATCTCAACAAATGAATAACCTTGTTGTAAACTCCACCTTACACAATGGTATCGTCGACAAAGACCACCACGGTCAACAACGCGAGCATCGGCAAGGTCTTATTGACGACAACTACCGATCAACCATCCTTTACAACATGGATCATCGAATTTCTATAGATATTATCGAGCTAGATGCTTCGGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGAAAAGGGTTCAAGCGGGACGCGAACCTAAGAATGCACATGAGGGCGCACGGGGATGAGTACAAAGCGAGCGGGGCTTTGAGCAACCCAGAGAAGAGCCATGGAAGGGAGATGAAGATAAGCAAGATGGGGATCAAATATTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAGCCATTGAAGTCATTGATCTGTGTGAAGAATCATTACAAGAGAACTCATTGCCCCAAAATGTACGTGTGCAAGCTTTGTAGTAGGAAGAAATTTTCAGTGCTCTCTGATTTGAGGACTCATGAGAAGCACTGTGGGGATGTGAAATGGCTGTGTTCTTGTGGAACAACATTTTCCAGGAAAGATAAGCTGATGGGCCATGTCGAATTGTTCGTCGGGCACGCCCCGGCGATCGGTTTATCGACATAA | 963 | 44.86 | MISNSQLLSLPSQHDPLVSSSNDHHETLDHLFSSDSHSSSLLYNLSILKEKLHQIQSVVNVVVCNYQGSTESPPPPLSPMSTAAINSLIQDLIMAASSMLFTSQQMNNLVVNSTLHNGIVDKDHHGQQREHRQGLIDDNYRSTILYNMDHRISIDIIELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHGREMKISKMGIKYSCPQEGCRWNQKHVKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVELFVGHAPAIGLST | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11413036 | 11414174 | + | Sed0012362.1 | Sed11g0732 | 729378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0732 | 320 | SMART | c2h2final6 | 222 | 255 | IPR013087 | - | |
Sed11g0732 | 320 | SMART | c2h2final6 | 170 | 192 | IPR013087 | - | |
Sed11g0732 | 320 | SMART | c2h2final6 | 260 | 282 | IPR013087 | - | |
Sed11g0732 | 320 | Gene3D | Classic Zinc Finger | 258 | 308 | - | - | |
Sed11g0732 | 320 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 170 | 197 | IPR013087 | - | |
Sed11g0732 | 320 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sed11g0732 | 320 | FunFam | Zinc finger protein 574 | 169 | 194 | - | - | |
Sed11g0732 | 320 | Gene3D | Classic Zinc Finger | 159 | 226 | - | - | |
Sed11g0732 | 320 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 172 | 192 | IPR013087 | - | |
Sed11g0732 | 320 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Sed11g0732 | 320 | SUPERFAMILY | beta-beta-alpha zinc fingers | 168 | 195 | IPR036236 | - | |
Sed11g0732 | 320 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 28 | 317 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
Sed11g0732 | 320 | Pfam | Zinc finger, C2H2 type | 170 | 192 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1769 | Sed-Chr10:34767779 | Sed11g0732 | Sed-Chr11:11413036 | 3.70E-63 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39917 | PF00096 | zf-C2H2 | 7.90E-05 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0732 | - | - | - | 0.0 |