Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0732 ATGATTTCAAATTCTCAATTGCTCTCTCTTCCTTCACAACATGATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTTTCTTCTGATTCTCATTCAAGCTCTCTCCTTTACAACCTCTCAATTTTGAAAGAGAAACTCCACCAAATCCAATCGGTCGTCAACGTCGTCGTCTGTAACTACCAGGGCTCGACTGAATCCCCACCCCCGCCTCTGTCTCCCATGTCCACTGCAGCTATCAACTCTTTGATCCAAGACCTCATTATGGCTGCTTCCTCTATGTTGTTCACATCTCAACAAATGAATAACCTTGTTGTAAACTCCACCTTACACAATGGTATCGTCGACAAAGACCACCACGGTCAACAACGCGAGCATCGGCAAGGTCTTATTGACGACAACTACCGATCAACCATCCTTTACAACATGGATCATCGAATTTCTATAGATATTATCGAGCTAGATGCTTCGGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGAAAAGGGTTCAAGCGGGACGCGAACCTAAGAATGCACATGAGGGCGCACGGGGATGAGTACAAAGCGAGCGGGGCTTTGAGCAACCCAGAGAAGAGCCATGGAAGGGAGATGAAGATAAGCAAGATGGGGATCAAATATTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAGCCATTGAAGTCATTGATCTGTGTGAAGAATCATTACAAGAGAACTCATTGCCCCAAAATGTACGTGTGCAAGCTTTGTAGTAGGAAGAAATTTTCAGTGCTCTCTGATTTGAGGACTCATGAGAAGCACTGTGGGGATGTGAAATGGCTGTGTTCTTGTGGAACAACATTTTCCAGGAAAGATAAGCTGATGGGCCATGTCGAATTGTTCGTCGGGCACGCCCCGGCGATCGGTTTATCGACATAA 963 44.86 MISNSQLLSLPSQHDPLVSSSNDHHETLDHLFSSDSHSSSLLYNLSILKEKLHQIQSVVNVVVCNYQGSTESPPPPLSPMSTAAINSLIQDLIMAASSMLFTSQQMNNLVVNSTLHNGIVDKDHHGQQREHRQGLIDDNYRSTILYNMDHRISIDIIELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHGREMKISKMGIKYSCPQEGCRWNQKHVKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVELFVGHAPAIGLST 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11413036 11414174 + Sed0012362.1 Sed11g0732 729378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0732 320 SMART c2h2final6 222 255 IPR013087 -
Sed11g0732 320 SMART c2h2final6 170 192 IPR013087 -
Sed11g0732 320 SMART c2h2final6 260 282 IPR013087 -
Sed11g0732 320 Gene3D Classic Zinc Finger 258 308 - -
Sed11g0732 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Sed11g0732 320 MobiDBLite consensus disorder prediction 1 22 - -
Sed11g0732 320 FunFam Zinc finger protein 574 169 194 - -
Sed11g0732 320 Gene3D Classic Zinc Finger 159 226 - -
Sed11g0732 320 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Sed11g0732 320 MobiDBLite consensus disorder prediction 1 18 - -
Sed11g0732 320 SUPERFAMILY beta-beta-alpha zinc fingers 168 195 IPR036236 -
Sed11g0732 320 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 28 317 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Sed11g0732 320 Pfam Zinc finger, C2H2 type 170 192 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1769 Sed-Chr10:34767779 Sed11g0732 Sed-Chr11:11413036 3.70E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39917 PF00096 zf-C2H2 7.90E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0732 - - - 0.0