Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0759 ATGGGAGGAGAAAAGGCGAAGGTGGTGGTGATTATGGGGCCGACCGGTTCTGGGAAGTCTCGTCTCGCCATCGATTTGGCTTCTCAATTTCCCGTTGAGATCATCAACGCCGATTCTATGCAGGTCTATCGCGGATTGGACGTCCTCACAAACAAAGTTCCCCTTCAAGATCAAAATGGAGTGCCGCATCATCTTTTAGGTTCAGTGAGTCCTACTGTTGAATTCACGGCTAAAGACTTTCGAGATTCTGCCATTCCTGTTATTGATGACATATCATCACGTGGATGCTTACCGGCAATAGTGGGTGGAACGAATTATTATATACAGGCTCTTGTCAGCCCATTTCTTCTGGATGATTCTGCTGCAAATGTCGGCGAAAGCTGCTCCAATTTTATTGGAGATGAGGAGCTGAGTACTGAGTTGGATGAGGGAGGAGATGGCTTAAAGTATGACCATAACCATCTTAAAGAAATTGATCCAGTTTCAGCTGGCAGACTCCATCCCAATAACCACAGAAAAATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACTCTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGGCAAGCTGATAGTTTCAGATACGATTGCTGCTTGATATGTGTTGATGCTTCTGTTTCACAGCTAGATGAACATGTTGATTCTAGAGTTGATACCATGTTGTCTGCTGGATTACTTGATGAGGTCTATGATATTTACAATCCAAATGCAAACTATACTAGAGGATTGCGCCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTCTTGAGCTATTATGTAGCTAAAGGTATATGCCGCAAAGATAGCAATGGACTTGGTCCAAATAATTCAATAGAGTGCAATAAGATTCTGAAAGAGAATATGAGGTCAATCCTAAGTTCATCAAGTGATGACCAATGCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGAAGGCAGCTTAAGAGACTAGAAACTTTGTTTGGTTGGAAGGTCCACTATGTTGATTCCACTGAATATATAGCATGCAAAGTGGAGGATTCATGGACCGCAGAAGTCGTAGAACCTGCAGTCCAGATAATTAGGTCTTTCCTTGAAGATAGTTGCTCGGCAACTGAGACAGTGAATCCACGTAGTTCTGGTCAAACAATTAAAAGGGACTTGTGGAAACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACATAATCAAGGTCGCACACATCGGAAGCGAATGTACAGTCTTAAGAAGAAAGGCGAAGGGCTTTTCTTACTGCATCAGAAACTACCACAAGAGCAACTCTAA 1386 42.5 MGGEKAKVVVIMGPTGSGKSRLAIDLASQFPVEIINADSMQVYRGLDVLTNKVPLQDQNGVPHHLLGSVSPTVEFTAKDFRDSAIPVIDDISSRGCLPAIVGGTNYYIQALVSPFLLDDSAANVGESCSNFIGDEELSTELDEGGDGLKYDHNHLKEIDPVSAGRLHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAENWGQADSFRYDCCLICVDASVSQLDEHVDSRVDTMLSAGLLDEVYDIYNPNANYTRGLRQAIGVREFEEFLSYYVAKGICRKDSNGLGPNNSIECNKILKENMRSILSSSSDDQCSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKVHYVDSTEYIACKVEDSWTAEVVEPAVQIIRSFLEDSCSATETVNPRSSGQTIKRDLWKQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYSLKKKGEGLFLLHQKLPQEQL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13262939 13278691 - Sed0023377.1 Sed11g0759 729405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0759 461 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 7 391 IPR039657 GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER)
Sed11g0759 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 114 IPR027417 -
Sed11g0759 461 Gene3D - 5 407 IPR027417 -
Sed11g0759 461 SUPERFAMILY beta-beta-alpha zinc fingers 397 443 IPR036236 -
Sed11g0759 461 Gene3D Classic Zinc Finger 408 448 - -
Sed11g0759 461 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 8 271 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Sed11g0759 461 FunFam tRNA dimethylallyltransferase 405 447 - -
Sed11g0759 461 Pfam IPP transferase 41 340 - -
Sed11g0759 461 Hamap tRNA dimethylallyltransferase [miaA]. 8 384 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Sed11g0759 461 Gene3D - 133 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0759 Sed-Chr11:13262939 Sed11g1628 Sed-Chr11:31642291 8.10E-41 dispersed
Sed11g0759 Sed-Chr11:13262939 Sed11g0760 Sed-Chr11:13262939 1.60E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0759 K00791 - csv:101202758 756.518