Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0759 | ATGGGAGGAGAAAAGGCGAAGGTGGTGGTGATTATGGGGCCGACCGGTTCTGGGAAGTCTCGTCTCGCCATCGATTTGGCTTCTCAATTTCCCGTTGAGATCATCAACGCCGATTCTATGCAGGTCTATCGCGGATTGGACGTCCTCACAAACAAAGTTCCCCTTCAAGATCAAAATGGAGTGCCGCATCATCTTTTAGGTTCAGTGAGTCCTACTGTTGAATTCACGGCTAAAGACTTTCGAGATTCTGCCATTCCTGTTATTGATGACATATCATCACGTGGATGCTTACCGGCAATAGTGGGTGGAACGAATTATTATATACAGGCTCTTGTCAGCCCATTTCTTCTGGATGATTCTGCTGCAAATGTCGGCGAAAGCTGCTCCAATTTTATTGGAGATGAGGAGCTGAGTACTGAGTTGGATGAGGGAGGAGATGGCTTAAAGTATGACCATAACCATCTTAAAGAAATTGATCCAGTTTCAGCTGGCAGACTCCATCCCAATAACCACAGAAAAATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACTCTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGGCAAGCTGATAGTTTCAGATACGATTGCTGCTTGATATGTGTTGATGCTTCTGTTTCACAGCTAGATGAACATGTTGATTCTAGAGTTGATACCATGTTGTCTGCTGGATTACTTGATGAGGTCTATGATATTTACAATCCAAATGCAAACTATACTAGAGGATTGCGCCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTCTTGAGCTATTATGTAGCTAAAGGTATATGCCGCAAAGATAGCAATGGACTTGGTCCAAATAATTCAATAGAGTGCAATAAGATTCTGAAAGAGAATATGAGGTCAATCCTAAGTTCATCAAGTGATGACCAATGCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGAAGGCAGCTTAAGAGACTAGAAACTTTGTTTGGTTGGAAGGTCCACTATGTTGATTCCACTGAATATATAGCATGCAAAGTGGAGGATTCATGGACCGCAGAAGTCGTAGAACCTGCAGTCCAGATAATTAGGTCTTTCCTTGAAGATAGTTGCTCGGCAACTGAGACAGTGAATCCACGTAGTTCTGGTCAAACAATTAAAAGGGACTTGTGGAAACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACATAATCAAGGTCGCACACATCGGAAGCGAATGTACAGTCTTAAGAAGAAAGGCGAAGGGCTTTTCTTACTGCATCAGAAACTACCACAAGAGCAACTCTAA | 1386 | 42.5 | MGGEKAKVVVIMGPTGSGKSRLAIDLASQFPVEIINADSMQVYRGLDVLTNKVPLQDQNGVPHHLLGSVSPTVEFTAKDFRDSAIPVIDDISSRGCLPAIVGGTNYYIQALVSPFLLDDSAANVGESCSNFIGDEELSTELDEGGDGLKYDHNHLKEIDPVSAGRLHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAENWGQADSFRYDCCLICVDASVSQLDEHVDSRVDTMLSAGLLDEVYDIYNPNANYTRGLRQAIGVREFEEFLSYYVAKGICRKDSNGLGPNNSIECNKILKENMRSILSSSSDDQCSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKVHYVDSTEYIACKVEDSWTAEVVEPAVQIIRSFLEDSCSATETVNPRSSGQTIKRDLWKQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYSLKKKGEGLFLLHQKLPQEQL | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13262939 | 13278691 | - | Sed0023377.1 | Sed11g0759 | 729405 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0759 | 461 | PANTHER | TRNA DIMETHYLALLYLTRANSFERASE | 7 | 391 | IPR039657 | GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER) | |
Sed11g0759 | 461 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 114 | IPR027417 | - | |
Sed11g0759 | 461 | Gene3D | - | 5 | 407 | IPR027417 | - | |
Sed11g0759 | 461 | SUPERFAMILY | beta-beta-alpha zinc fingers | 397 | 443 | IPR036236 | - | |
Sed11g0759 | 461 | Gene3D | Classic Zinc Finger | 408 | 448 | - | - | |
Sed11g0759 | 461 | NCBIfam | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | 8 | 271 | IPR018022 | GO:0008033(InterPro)|GO:0052381(InterPro) | |
Sed11g0759 | 461 | FunFam | tRNA dimethylallyltransferase | 405 | 447 | - | - | |
Sed11g0759 | 461 | Pfam | IPP transferase | 41 | 340 | - | - | |
Sed11g0759 | 461 | Hamap | tRNA dimethylallyltransferase [miaA]. | 8 | 384 | IPR018022 | GO:0008033(InterPro)|GO:0052381(InterPro) | |
Sed11g0759 | 461 | Gene3D | - | 133 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0759 | Sed-Chr11:13262939 | Sed11g1628 | Sed-Chr11:31642291 | 8.10E-41 | dispersed | |
Sed11g0759 | Sed-Chr11:13262939 | Sed11g0760 | Sed-Chr11:13262939 | 1.60E-193 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0759 | K00791 | - | csv:101202758 | 756.518 |