Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0766 ATGGCCGTTCTTACAGCCTTGTTTATCAGTTCCCTCTGGCTATTTGTGGCGGCAAATGCGGATGTCAATGAGCATGATCAATACTGGCAGAATCGTTCGCTAATAGCTCAGAAGGTTGCTCAGGAAGCCTTCAATCCCGACCCCGAAGCTATCACCGAAAGTTTCAATGCCGCTGTGGGCCGGGAGTTGTTGGGTAGCAACAGTACAAGAAGAAGCCTGAGGAAATACAAGGGTCCATGTTTGGCGACAAACCCCATAGACCGATGCTGGAGATGCAATCGAAAATGGGCCAAAAATCGAAAGAAGCTAGCAAATTGTGCCTTAGGTTTTGGCCACATGACCATCGGTGGAAAGAGAGGACCATACTACGTTGTGACGGACGGCTCGGACGATGACTTGGTGAACCCCAAGCCTGGAACCCTACGCCATGCCGTAATTCAAAAAGGCCCACTTTGGATTATCTTTGGTCGCAGCATGGTTATCAGGCTCACCCAAGAGCTCATGATCTCGAGCGATAAGACAATCGATGCTCGTGGCTTCAATGTCCGCATTGCCTTCGGAGCTGGCCTCACCATTCAGTATGTCGATAATGTCATCATCCATAACCTTCATATCCACGACATTATCTCCAAATCTGGTGGATTCATTAGAGATGCCGTTGATCATTTCGGGTTTCGAACCCAAAGTGACGGCGATGGCATCTCCATATTTGGCTCTACCCATGTTTGGATTGACCATGTTTCCATGTCCAATTGTCAAGATGGCCTCATCGATGCTATTATGAGTTCTACTGCAATCACCATCTCCAATTGTCATTTTACTCACCATAATGAGGCAATGTTGTTCGGAGCGAGTGATAGCTACTCCGGGGACTCGATAATGCAAATAACGTTGGCATTCAATAACTTTGGGAGAGGACTAGTGCAGAGGATGCCAAGATGCAGATGGGGTTACTTCCATGTTGTTAATAATGACTACACCCATTGGCTTATGTACGCCATTGGTGGAAGCCAACATCCAACCATTGTAAGCCAAGGCAACCGTTTCATTGCTCCTCCAAACCCTAATGCCAAAAAGGTAACAAAGAGAGACTATGCATCCGAGAGCGATTGGAAGACATGGTCATGGAGATCGGAGGGCGATTTGTTATTGAATGGGGCAATCTTCGAACCATCCGGCGATCAATCCAAAACCAATAAGAAGAACTTATCAAGATATGATATGATTAAGTACAAGCCGGGAACCTACGTGAGAAGACTTACACGCTTTGCTGGCACACTCGAATGCCGTGTACGCAAACGGTGCTAG 1308 47.09 MAVLTALFISSLWLFVAANADVNEHDQYWQNRSLIAQKVAQEAFNPDPEAITESFNAAVGRELLGSNSTRRSLRKYKGPCLATNPIDRCWRCNRKWAKNRKKLANCALGFGHMTIGGKRGPYYVVTDGSDDDLVNPKPGTLRHAVIQKGPLWIIFGRSMVIRLTQELMISSDKTIDARGFNVRIAFGAGLTIQYVDNVIIHNLHIHDIISKSGGFIRDAVDHFGFRTQSDGDGISIFGSTHVWIDHVSMSNCQDGLIDAIMSSTAITISNCHFTHHNEAMLFGASDSYSGDSIMQITLAFNNFGRGLVQRMPRCRWGYFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKKVTKRDYASESDWKTWSWRSEGDLLLNGAIFEPSGDQSKTNKKNLSRYDMIKYKPGTYVRRLTRFAGTLECRVRKRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13743833 13745473 + Sed0005861.1 Sed11g0766 729412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0766 435 Pfam Pectate lyase 189 349 IPR002022 -
Sed11g0766 435 Pfam Pectate lyase, N terminus 22 73 IPR007524 GO:0030570(InterPro)
Sed11g0766 435 Gene3D - 83 428 IPR012334 -
Sed11g0766 435 PANTHER PECTATE LYASE 18-RELATED 32 431 IPR045032 GO:0030570(InterPro)
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Sed11g0766 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Sed11g0766 435 SMART amb_all 158 355 IPR002022 -
Sed11g0766 435 SUPERFAMILY Pectin lyase-like 58 429 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1830 Sed-Chr1:13466423 Sed11g0766 Sed-Chr11:13743833 1.30E-169 dispersed
Sed11g0766 Sed-Chr11:13743833 Sed11g0768 Sed-Chr11:14150566 2.70E-171 dispersed
Sed11g0766 Sed-Chr11:13743833 Sed11g0767 Sed-Chr11:14088755 2.40E-212 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0766 K01728 - csv:101217922 740.725