Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0767 ATGACTTCTTTTAGAGCATTATTTGTGTGCTCGATTTGGCTGTTGTTGTTTGCGTTGACCAATGCGGATGACATCATTGAGCAAGATGAATACCCGCAGAATCATTCGGTAGAAGCTGTGGAAATCGCTCAAGAATACTGGCAGAATCGTTCGGTAGAAGCTGCGAAAATCGCTCAAGATGCCTACGATCCCAACCCCGAAAATATTACCCACAATTTGAATGCCGCCGTTGGCCGGGAGTTGTTGGGCAGCAACAACACAAGAAGAAGCCTAAGGAAATACAACGGTCCATGCTTGGCGACCAACCCCATAGACCGAGGTTGGAGATGCGATAAAAATTGGGCCAAGAACCGAAAGAAGCTGGCTGATTGTGCCTTAGGCTTTGGGCACAGAGCCACCGGTGGAAAGAGAGGACGTTTCTACACCGTTACGGATGGCGGGGACGATGACCTTGTGAACCCCAAGCCTGGAACCCTACGTCACGCTGTTATCCAAAAGGGCCCACTTTGGATCATCTTCGGGCGCAGCATGGTCATCAGGCTCACCCAAGAGCTCATGATCTCGGGTGACAAGACCATTGATGCTCGCGGCTTCAATGTCCACATTGCCTATGGCGCTGGCATCACCATTCAATTCGTTCATAATGTCATCATCCATGGCCTTCAAATCCACGATATTGTCTCCAAACCTGGTGGAAACATTAGAGATTCTGTTGATCATTTCGGCTTCCGAACAAAGAGCGACGGTGATGGCATCTCCATATTTGGCTCTAGCCATATTTGGGTTGACCATGTTTCCATGTCCAATTGCCAAGATGGCCTCATCGATGCCATCATGGCATCTACTGCAATCACCATCTCCAACTGTCATTTTACTCACCACAACGAGGTGATGTTGTTCGGAGCGAGTGATAGCTACTCAGACGACACGAAAATGCAAATAACATTGGCATTCAATCACTTCGGGAGAGGATTGGTGCAAAGGATGCCAAGGTGTAGATGGGGTTACTTCCATGTTGTTAATAATGACTACACCCATTGGCTTATGTACGCCATCGGTGGCAGCCAGCACCCGGCCATCGTTAGTCAAGGCAACCGTTTCATTGCTCCTCCAAACCCTAATGCCAAAATGGTAACAAAGAGAGACTATGCATCGGAGACCGAGTGGAAGGGTTGGTCATGGAGATCGGAAGGAGACTTGTTAATGAACGGTGCAGTCTTCGAACCATCGGGCGATCAATCCAAAGCTAATAAGCAGCATTTTTCAAGATATGAAATGATTAAGTACAAACCAGGAACCTACGTGAGAAGACTTACCCGCTTCGCTGGCAAGCTCGATTGCTACGTAGGCAAGCCCTGCTAA 1362 48.31 MTSFRALFVCSIWLLLFALTNADDIIEQDEYPQNHSVEAVEIAQEYWQNRSVEAAKIAQDAYDPNPENITHNLNAAVGRELLGSNNTRRSLRKYNGPCLATNPIDRGWRCDKNWAKNRKKLADCALGFGHRATGGKRGRFYTVTDGGDDDLVNPKPGTLRHAVIQKGPLWIIFGRSMVIRLTQELMISGDKTIDARGFNVHIAYGAGITIQFVHNVIIHGLQIHDIVSKPGGNIRDSVDHFGFRTKSDGDGISIFGSSHIWVDHVSMSNCQDGLIDAIMASTAITISNCHFTHHNEVMLFGASDSYSDDTKMQITLAFNHFGRGLVQRMPRCRWGYFHVVNNDYTHWLMYAIGGSQHPAIVSQGNRFIAPPNPNAKMVTKRDYASETEWKGWSWRSEGDLLMNGAVFEPSGDQSKANKQHFSRYEMIKYKPGTYVRRLTRFAGKLDCYVGKPC 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14088755 14090472 - Sed0016571.1 Sed11g0767 729413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0767 453 Gene3D - 101 446 IPR012334 -
Sed11g0767 453 SMART amb_all 176 373 IPR002022 -
Sed11g0767 453 Pfam Pectate lyase, N terminus 44 91 IPR007524 GO:0030570(InterPro)
Sed11g0767 453 Pfam Pectate lyase 208 367 IPR002022 -
Sed11g0767 453 SUPERFAMILY Pectin lyase-like 79 444 IPR011050 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Sed11g0767 453 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Sed11g0767 453 PANTHER PECTATE LYASE 18-RELATED 20 450 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1352 Sed-Chr8:28116850 Sed11g0767 Sed-Chr11:14088755 1.30E-176 dispersed
Sed11g0767 Sed-Chr11:14088755 Sed12g0409 Sed-Chr12:2470045 4.40E-132 dispersed
Sed11g0766 Sed-Chr11:13743833 Sed11g0767 Sed-Chr11:14088755 2.40E-212 tandem
Sed11g0767 Sed-Chr11:14088755 Sed11g0768 Sed-Chr11:14150566 1.30E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0767 K01728 - csv:101217922 701.434