Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0767 | ATGACTTCTTTTAGAGCATTATTTGTGTGCTCGATTTGGCTGTTGTTGTTTGCGTTGACCAATGCGGATGACATCATTGAGCAAGATGAATACCCGCAGAATCATTCGGTAGAAGCTGTGGAAATCGCTCAAGAATACTGGCAGAATCGTTCGGTAGAAGCTGCGAAAATCGCTCAAGATGCCTACGATCCCAACCCCGAAAATATTACCCACAATTTGAATGCCGCCGTTGGCCGGGAGTTGTTGGGCAGCAACAACACAAGAAGAAGCCTAAGGAAATACAACGGTCCATGCTTGGCGACCAACCCCATAGACCGAGGTTGGAGATGCGATAAAAATTGGGCCAAGAACCGAAAGAAGCTGGCTGATTGTGCCTTAGGCTTTGGGCACAGAGCCACCGGTGGAAAGAGAGGACGTTTCTACACCGTTACGGATGGCGGGGACGATGACCTTGTGAACCCCAAGCCTGGAACCCTACGTCACGCTGTTATCCAAAAGGGCCCACTTTGGATCATCTTCGGGCGCAGCATGGTCATCAGGCTCACCCAAGAGCTCATGATCTCGGGTGACAAGACCATTGATGCTCGCGGCTTCAATGTCCACATTGCCTATGGCGCTGGCATCACCATTCAATTCGTTCATAATGTCATCATCCATGGCCTTCAAATCCACGATATTGTCTCCAAACCTGGTGGAAACATTAGAGATTCTGTTGATCATTTCGGCTTCCGAACAAAGAGCGACGGTGATGGCATCTCCATATTTGGCTCTAGCCATATTTGGGTTGACCATGTTTCCATGTCCAATTGCCAAGATGGCCTCATCGATGCCATCATGGCATCTACTGCAATCACCATCTCCAACTGTCATTTTACTCACCACAACGAGGTGATGTTGTTCGGAGCGAGTGATAGCTACTCAGACGACACGAAAATGCAAATAACATTGGCATTCAATCACTTCGGGAGAGGATTGGTGCAAAGGATGCCAAGGTGTAGATGGGGTTACTTCCATGTTGTTAATAATGACTACACCCATTGGCTTATGTACGCCATCGGTGGCAGCCAGCACCCGGCCATCGTTAGTCAAGGCAACCGTTTCATTGCTCCTCCAAACCCTAATGCCAAAATGGTAACAAAGAGAGACTATGCATCGGAGACCGAGTGGAAGGGTTGGTCATGGAGATCGGAAGGAGACTTGTTAATGAACGGTGCAGTCTTCGAACCATCGGGCGATCAATCCAAAGCTAATAAGCAGCATTTTTCAAGATATGAAATGATTAAGTACAAACCAGGAACCTACGTGAGAAGACTTACCCGCTTCGCTGGCAAGCTCGATTGCTACGTAGGCAAGCCCTGCTAA | 1362 | 48.31 | MTSFRALFVCSIWLLLFALTNADDIIEQDEYPQNHSVEAVEIAQEYWQNRSVEAAKIAQDAYDPNPENITHNLNAAVGRELLGSNNTRRSLRKYNGPCLATNPIDRGWRCDKNWAKNRKKLADCALGFGHRATGGKRGRFYTVTDGGDDDLVNPKPGTLRHAVIQKGPLWIIFGRSMVIRLTQELMISGDKTIDARGFNVHIAYGAGITIQFVHNVIIHGLQIHDIVSKPGGNIRDSVDHFGFRTKSDGDGISIFGSSHIWVDHVSMSNCQDGLIDAIMASTAITISNCHFTHHNEVMLFGASDSYSDDTKMQITLAFNHFGRGLVQRMPRCRWGYFHVVNNDYTHWLMYAIGGSQHPAIVSQGNRFIAPPNPNAKMVTKRDYASETEWKGWSWRSEGDLLMNGAVFEPSGDQSKANKQHFSRYEMIKYKPGTYVRRLTRFAGKLDCYVGKPC | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14088755 | 14090472 | - | Sed0016571.1 | Sed11g0767 | 729413 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0767 | 453 | Gene3D | - | 101 | 446 | IPR012334 | - | |
Sed11g0767 | 453 | SMART | amb_all | 176 | 373 | IPR002022 | - | |
Sed11g0767 | 453 | Pfam | Pectate lyase, N terminus | 44 | 91 | IPR007524 | GO:0030570(InterPro) | |
Sed11g0767 | 453 | Pfam | Pectate lyase | 208 | 367 | IPR002022 | - | |
Sed11g0767 | 453 | SUPERFAMILY | Pectin lyase-like | 79 | 444 | IPR011050 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 328 | 347 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 124 | 141 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 184 | 200 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 248 | 269 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 350 | 369 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 424 | 447 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 392 | 416 | IPR018082 | - | |
Sed11g0767 | 453 | PRINTS | Pollen allergen Amb family signature | 148 | 173 | IPR018082 | - | |
Sed11g0767 | 453 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 450 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1352 | Sed-Chr8:28116850 | Sed11g0767 | Sed-Chr11:14088755 | 1.30E-176 | dispersed | |
Sed11g0767 | Sed-Chr11:14088755 | Sed12g0409 | Sed-Chr12:2470045 | 4.40E-132 | dispersed | |
Sed11g0766 | Sed-Chr11:13743833 | Sed11g0767 | Sed-Chr11:14088755 | 2.40E-212 | tandem | |
Sed11g0767 | Sed-Chr11:14088755 | Sed11g0768 | Sed-Chr11:14150566 | 1.30E-163 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0767 | K01728 | - | csv:101217922 | 701.434 |