Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0768 | ATGGCTCTTGTTAGAGCTTTGTTTGTCTCTTCGTTGTGGCTGTTTGTGTTTGCAAATGCATCTGTCAATGAGACTGTTGAATACTGGCAGACTCGTGAACATGAAGCTGTGAAGGTTGCTAATGATGCCTACAATCCCCACCCCGAAGCTTCTACTGACAATTTCAATGCTGCCGTGAGACGGGACTTGCTGGGTAGCAACAACACTAGAAGGAACCTAAAGAAATACACGGGTCCATGTTTGGCCACCAACCCAATAGACAGATGCTGGAGATGTGATCGAAACTGGGCTGACGATCGAAATAAGCTAGCAGATTGTGCCTTGGGCTTTGGCCACAAAGCCACGGGTGGAAAGAGAGGACCATTCTACATTGTGAGCGATGCCTCCGATGATGATTGTGTTAACCCCAAGCCTGGAACCCTATGCCACGCCGTGACTCAAAAAGGCCCACTTTGGATCATCTTCGATCGCAACATGAACATCAGACTCAGCCAAGAGCTCATCATCTCGAGCAACAAGACCATCGATGGTCGTGGCATCAATGTTCAAATTTCCTACGGCGCTGGGCTCACTATTCAATACGTCGAGAATATCATCATCCATAGCATTGAAATCCAAAGCATTATCTCTAAATTTGGTGGAACAATAAGAGATTCTTTTGATCATTACGGGTACCGAGACCAGAGCGATGGGGACGACATCTCTATATTTGGCTCTTCTCATATTTGGATCGACCACATTTCCATGTCCAGCTGTGAAGATGGACTCATTGATGCCATCAGAGGTTCCACAGCCATCACCATCTCAAACTGGCATTTCTCTCACCACAATAAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAATAACGATTACACCTGGTGGCTTATGTATGCGATTGGCTGTAGCATGCATCCGACCATTATTAGCCAAGGCAACCGTTTCATCGCTCCAGCAAACCCTAATGCGAAAAAGTGGAAGAAATGGTCGTGGAGATCGGAGGGGGATTTGTTGTTGAATGGAGCAGTGTTTGAACCGTCAGGTGGTCAAACCAAAAGCGATAAGAGCTTCACAAGATATAAACTCATTAAGTACAAGCCTGGAAGCTATGTCAAAAGACTAACACGATTTGCTGGCAGGCTCGATTGTAGCATAAGCAAACCTTGCTAA | 1179 | 46.06 | MALVRALFVSSLWLFVFANASVNETVEYWQTREHEAVKVANDAYNPHPEASTDNFNAAVRRDLLGSNNTRRNLKKYTGPCLATNPIDRCWRCDRNWADDRNKLADCALGFGHKATGGKRGPFYIVSDASDDDCVNPKPGTLCHAVTQKGPLWIIFDRNMNIRLSQELIISSNKTIDGRGINVQISYGAGLTIQYVENIIIHSIEIQSIISKFGGTIRDSFDHYGYRDQSDGDDISIFGSSHIWIDHISMSSCEDGLIDAIRGSTAITISNWHFSHHNKRMPRCRWGFFHVVNNDYTWWLMYAIGCSMHPTIISQGNRFIAPANPNAKKWKKWSWRSEGDLLLNGAVFEPSGGQTKSDKSFTRYKLIKYKPGSYVKRLTRFAGRLDCSISKPC | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14150566 | 14152020 | - | Sed0020749.1 | Sed11g0768 | 729414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0768 | 392 | Pfam | Pectate lyase | 261 | 318 | IPR002022 | - | |
Sed11g0768 | 392 | SUPERFAMILY | Pectin lyase-like | 59 | 385 | IPR011050 | - | |
Sed11g0768 | 392 | SMART | amb_all | 158 | 324 | IPR002022 | - | |
Sed11g0768 | 392 | PRINTS | Pollen allergen Amb family signature | 130 | 155 | IPR018082 | - | |
Sed11g0768 | 392 | PRINTS | Pollen allergen Amb family signature | 230 | 251 | IPR018082 | - | |
Sed11g0768 | 392 | PRINTS | Pollen allergen Amb family signature | 106 | 123 | IPR018082 | - | |
Sed11g0768 | 392 | PRINTS | Pollen allergen Amb family signature | 166 | 182 | IPR018082 | - | |
Sed11g0768 | 392 | Pfam | Pectate lyase, N terminus | 24 | 73 | IPR007524 | GO:0030570(InterPro) | |
Sed11g0768 | 392 | Gene3D | - | 277 | 385 | IPR012334 | - | |
Sed11g0768 | 392 | Gene3D | - | 83 | 276 | IPR012334 | - | |
Sed11g0768 | 392 | PANTHER | PECTATE LYASE 18-RELATED | 23 | 278 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0766 | Sed-Chr11:13743833 | Sed11g0768 | Sed-Chr11:14150566 | 2.70E-171 | dispersed | |
Sed11g0768 | Sed-Chr11:14150566 | Sed12g0409 | Sed-Chr12:2470045 | 1.70E-95 | dispersed | |
Sed11g0767 | Sed-Chr11:14088755 | Sed11g0768 | Sed-Chr11:14150566 | 1.30E-163 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0768 | K01728 | - | csv:101217922 | 550.051 |