Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0768 ATGGCTCTTGTTAGAGCTTTGTTTGTCTCTTCGTTGTGGCTGTTTGTGTTTGCAAATGCATCTGTCAATGAGACTGTTGAATACTGGCAGACTCGTGAACATGAAGCTGTGAAGGTTGCTAATGATGCCTACAATCCCCACCCCGAAGCTTCTACTGACAATTTCAATGCTGCCGTGAGACGGGACTTGCTGGGTAGCAACAACACTAGAAGGAACCTAAAGAAATACACGGGTCCATGTTTGGCCACCAACCCAATAGACAGATGCTGGAGATGTGATCGAAACTGGGCTGACGATCGAAATAAGCTAGCAGATTGTGCCTTGGGCTTTGGCCACAAAGCCACGGGTGGAAAGAGAGGACCATTCTACATTGTGAGCGATGCCTCCGATGATGATTGTGTTAACCCCAAGCCTGGAACCCTATGCCACGCCGTGACTCAAAAAGGCCCACTTTGGATCATCTTCGATCGCAACATGAACATCAGACTCAGCCAAGAGCTCATCATCTCGAGCAACAAGACCATCGATGGTCGTGGCATCAATGTTCAAATTTCCTACGGCGCTGGGCTCACTATTCAATACGTCGAGAATATCATCATCCATAGCATTGAAATCCAAAGCATTATCTCTAAATTTGGTGGAACAATAAGAGATTCTTTTGATCATTACGGGTACCGAGACCAGAGCGATGGGGACGACATCTCTATATTTGGCTCTTCTCATATTTGGATCGACCACATTTCCATGTCCAGCTGTGAAGATGGACTCATTGATGCCATCAGAGGTTCCACAGCCATCACCATCTCAAACTGGCATTTCTCTCACCACAATAAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAATAACGATTACACCTGGTGGCTTATGTATGCGATTGGCTGTAGCATGCATCCGACCATTATTAGCCAAGGCAACCGTTTCATCGCTCCAGCAAACCCTAATGCGAAAAAGTGGAAGAAATGGTCGTGGAGATCGGAGGGGGATTTGTTGTTGAATGGAGCAGTGTTTGAACCGTCAGGTGGTCAAACCAAAAGCGATAAGAGCTTCACAAGATATAAACTCATTAAGTACAAGCCTGGAAGCTATGTCAAAAGACTAACACGATTTGCTGGCAGGCTCGATTGTAGCATAAGCAAACCTTGCTAA 1179 46.06 MALVRALFVSSLWLFVFANASVNETVEYWQTREHEAVKVANDAYNPHPEASTDNFNAAVRRDLLGSNNTRRNLKKYTGPCLATNPIDRCWRCDRNWADDRNKLADCALGFGHKATGGKRGPFYIVSDASDDDCVNPKPGTLCHAVTQKGPLWIIFDRNMNIRLSQELIISSNKTIDGRGINVQISYGAGLTIQYVENIIIHSIEIQSIISKFGGTIRDSFDHYGYRDQSDGDDISIFGSSHIWIDHISMSSCEDGLIDAIRGSTAITISNWHFSHHNKRMPRCRWGFFHVVNNDYTWWLMYAIGCSMHPTIISQGNRFIAPANPNAKKWKKWSWRSEGDLLLNGAVFEPSGGQTKSDKSFTRYKLIKYKPGSYVKRLTRFAGRLDCSISKPC 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14150566 14152020 - Sed0020749.1 Sed11g0768 729414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0768 392 Pfam Pectate lyase 261 318 IPR002022 -
Sed11g0768 392 SUPERFAMILY Pectin lyase-like 59 385 IPR011050 -
Sed11g0768 392 SMART amb_all 158 324 IPR002022 -
Sed11g0768 392 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Sed11g0768 392 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Sed11g0768 392 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Sed11g0768 392 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Sed11g0768 392 Pfam Pectate lyase, N terminus 24 73 IPR007524 GO:0030570(InterPro)
Sed11g0768 392 Gene3D - 277 385 IPR012334 -
Sed11g0768 392 Gene3D - 83 276 IPR012334 -
Sed11g0768 392 PANTHER PECTATE LYASE 18-RELATED 23 278 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0766 Sed-Chr11:13743833 Sed11g0768 Sed-Chr11:14150566 2.70E-171 dispersed
Sed11g0768 Sed-Chr11:14150566 Sed12g0409 Sed-Chr12:2470045 1.70E-95 dispersed
Sed11g0767 Sed-Chr11:14088755 Sed11g0768 Sed-Chr11:14150566 1.30E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0768 K01728 - csv:101217922 550.051