Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0775 ATGCCCTCTTCCATGTGTTCGTCTATTCGGGCAACGGCGCCGCAGTTGTTCCGCCGCCGGAACGGCTTCAGATTCTTCACAATGCTTCAACCAAACCAACGTGTATCCTTCGCGCCTCGCTTCGTTGCTTGTTTCTCCACCAACCACCACTCTGTTGCCATCCCCAGATCGGCGCACCCGCCCTTCGATCCTGCTGAGGACTTGTACGGACTTGGCGTCCGGTTAAACCCAAGGTTCATTACGATCGGCCTTTACTTCTTCTCATTTCCAGAACACCTTATGCTCAATTTTTCTGTGCTTTGTTCACCTTCTAGCGCACCTGAACCCAGGTCCTGGTTTGGCCCTAACGGTCAGTATATTAAAGAGCTACCATGTCCGAGTTGCCGAGGTAGGGGCTACACGCCCTGTACGGAATGTGGGATTGAAAGATCCCGTGCAGACTGTTCCGTATGTAATGGAAAGGGTATAGAGACCTGCCACCAATGCTTGGGAGATCGTGTCATATGGGAAGAGTCCATTGATGAACAACCATGGGAGAAAGCACGGTCAACTTCTCCATTAAGAATGAAGGAAGATGATGAAGTTGATAACTTGGAAATTAAGTTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGATTAAAGATCAGTCGATCATTGAAAAGTCTCAATGCCAAAACGGGTCTATTTAGTAAAAGAATGAAGATTATCCATCGTGACCCCACTCTTCATGCTCAGAGAGTGGCTGCAATAAAGAAAGCCAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCCTTGAAATCATTCTTTAGTGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGTAAAAATTGTGGACGTGAGGGGCATCGAAGACACTATTGTTCAGAACATAAGGAAGGTTCCATTGATAGGCGATTCAGATGTAGAGTATGTGGAGAGAAGGGCCACAACAGAAGAACTTGTGAGAAGTCTAGGTTGAATAGTAAACTGATGAGCAGAACAGTTCAGCGTCACTGTAGGATATGCGGTGCAAAGGGCCATAACAGGAGAAGCTGTTCGAAGTTCGATTTGAGCAATCCAAATACAGGTAGGCAGTATCCTGATGGGCGGAATCTTCGTAATGTGTTGAGCCTGAATTTGATCAATGGAGATAGAATGGCTAATGAAATCAGCCGAGTAAGGCAGCATTATTGTAGGATCTGCAATGAAAAGGGTAACAATCTACGGAACTGTCCCAAAATTGATAGGAAAGCTAATAATTCAACCCGTAGAAGAACATATGCCTGCAAACTATGCCATGAAAAAGGGCATTATAGTAAGACATGCCACAGTAGAATTATGAACAATCTACAGAATAATCCTCCAGGCGCTGTAAACCAATAA 1437 44.75 MPSSMCSSIRATAPQLFRRRNGFRFFTMLQPNQRVSFAPRFVACFSTNHHSVAIPRSAHPPFDPAEDLYGLGVRLNPRFITIGLYFFSFPEHLMLNFSVLCSPSSAPEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRADCSVCNGKGIETCHQCLGDRVIWEESIDEQPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKKAKGSAEARKRTSEALKSFFSDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCSEHKEGSIDRRFRCRVCGEKGHNRRTCEKSRLNSKLMSRTVQRHCRICGAKGHNRRSCSKFDLSNPNTGRQYPDGRNLRNVLSLNLINGDRMANEISRVRQHYCRICNEKGNNLRNCPKIDRKANNSTRRRTYACKLCHEKGHYSKTCHSRIMNNLQNNPPGAVNQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14616090 14623008 + Sed0021599.1 Sed11g0775 729421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0775 478 ProSiteProfiles Zinc finger CCHC-type profile. 325 341 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 117 386 IPR051714 GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER)
Sed11g0775 478 ProSiteProfiles Zinc finger CCHC-type profile. 299 314 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 Gene3D - 322 381 - -
Sed11g0775 478 SUPERFAMILY Retrovirus zinc finger-like domains 296 343 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 Coils Coil 188 208 - -
Sed11g0775 478 SMART c2hcfinal6 415 431 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 SMART c2hcfinal6 446 462 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 SMART c2hcfinal6 356 372 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 SMART c2hcfinal6 298 314 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 SMART c2hcfinal6 325 341 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed11g0775 478 Gene3D - 411 471 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0775 - - - 0.0