Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0775 | ATGCCCTCTTCCATGTGTTCGTCTATTCGGGCAACGGCGCCGCAGTTGTTCCGCCGCCGGAACGGCTTCAGATTCTTCACAATGCTTCAACCAAACCAACGTGTATCCTTCGCGCCTCGCTTCGTTGCTTGTTTCTCCACCAACCACCACTCTGTTGCCATCCCCAGATCGGCGCACCCGCCCTTCGATCCTGCTGAGGACTTGTACGGACTTGGCGTCCGGTTAAACCCAAGGTTCATTACGATCGGCCTTTACTTCTTCTCATTTCCAGAACACCTTATGCTCAATTTTTCTGTGCTTTGTTCACCTTCTAGCGCACCTGAACCCAGGTCCTGGTTTGGCCCTAACGGTCAGTATATTAAAGAGCTACCATGTCCGAGTTGCCGAGGTAGGGGCTACACGCCCTGTACGGAATGTGGGATTGAAAGATCCCGTGCAGACTGTTCCGTATGTAATGGAAAGGGTATAGAGACCTGCCACCAATGCTTGGGAGATCGTGTCATATGGGAAGAGTCCATTGATGAACAACCATGGGAGAAAGCACGGTCAACTTCTCCATTAAGAATGAAGGAAGATGATGAAGTTGATAACTTGGAAATTAAGTTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGATTAAAGATCAGTCGATCATTGAAAAGTCTCAATGCCAAAACGGGTCTATTTAGTAAAAGAATGAAGATTATCCATCGTGACCCCACTCTTCATGCTCAGAGAGTGGCTGCAATAAAGAAAGCCAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCCTTGAAATCATTCTTTAGTGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGTAAAAATTGTGGACGTGAGGGGCATCGAAGACACTATTGTTCAGAACATAAGGAAGGTTCCATTGATAGGCGATTCAGATGTAGAGTATGTGGAGAGAAGGGCCACAACAGAAGAACTTGTGAGAAGTCTAGGTTGAATAGTAAACTGATGAGCAGAACAGTTCAGCGTCACTGTAGGATATGCGGTGCAAAGGGCCATAACAGGAGAAGCTGTTCGAAGTTCGATTTGAGCAATCCAAATACAGGTAGGCAGTATCCTGATGGGCGGAATCTTCGTAATGTGTTGAGCCTGAATTTGATCAATGGAGATAGAATGGCTAATGAAATCAGCCGAGTAAGGCAGCATTATTGTAGGATCTGCAATGAAAAGGGTAACAATCTACGGAACTGTCCCAAAATTGATAGGAAAGCTAATAATTCAACCCGTAGAAGAACATATGCCTGCAAACTATGCCATGAAAAAGGGCATTATAGTAAGACATGCCACAGTAGAATTATGAACAATCTACAGAATAATCCTCCAGGCGCTGTAAACCAATAA | 1437 | 44.75 | MPSSMCSSIRATAPQLFRRRNGFRFFTMLQPNQRVSFAPRFVACFSTNHHSVAIPRSAHPPFDPAEDLYGLGVRLNPRFITIGLYFFSFPEHLMLNFSVLCSPSSAPEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRADCSVCNGKGIETCHQCLGDRVIWEESIDEQPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKKAKGSAEARKRTSEALKSFFSDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCSEHKEGSIDRRFRCRVCGEKGHNRRTCEKSRLNSKLMSRTVQRHCRICGAKGHNRRSCSKFDLSNPNTGRQYPDGRNLRNVLSLNLINGDRMANEISRVRQHYCRICNEKGNNLRNCPKIDRKANNSTRRRTYACKLCHEKGHYSKTCHSRIMNNLQNNPPGAVNQ | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14616090 | 14623008 | + | Sed0021599.1 | Sed11g0775 | 729421 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0775 | 478 | ProSiteProfiles | Zinc finger CCHC-type profile. | 325 | 341 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 117 | 386 | IPR051714 | GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER) | |
Sed11g0775 | 478 | ProSiteProfiles | Zinc finger CCHC-type profile. | 299 | 314 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | Gene3D | - | 322 | 381 | - | - | |
Sed11g0775 | 478 | SUPERFAMILY | Retrovirus zinc finger-like domains | 296 | 343 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | Coils | Coil | 188 | 208 | - | - | |
Sed11g0775 | 478 | SMART | c2hcfinal6 | 415 | 431 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | SMART | c2hcfinal6 | 446 | 462 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | SMART | c2hcfinal6 | 356 | 372 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | SMART | c2hcfinal6 | 298 | 314 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | SMART | c2hcfinal6 | 325 | 341 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed11g0775 | 478 | Gene3D | - | 411 | 471 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0775 | - | - | - | 0.0 |