Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0784 ATGTCGATCTCTTCTTTCTCCGGCTGCATCATTGACTCGAAACTACTCTGTGATGAGGACTCCTCTGGTATTTTCTCCGGAGGCTTGCCGGAGTACTCATCGGACTTTGAATCGCCGGCCAGCAGTGAGGATTCCATAGCCAGTTTCATAGAGGACGAGAGGCACTTTGTTCCTGGGATTGATTACTTCTCGCGCTTTCAGTCTCAATCGCTGGATTCTTCCGCTAGAGCCGACTCCATTGCATGGATTCTCAAGGTTCAAGCGTATTACGGTTTTCAACCACTCACAGCATACCTCTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGGAACAAGTGGATGGCTAATGCAGCTTCTTTCAGTGGCATGTTTGTCACTTGCAGCTAAAATGGAAGAACCTCTTGTTCCTTCTTTTCTAGAACTTCAGATTGAAGGAGCAAAGTATATATTTGAACCTAGAACAGTACGTAGGATGGAGCTTCTTGTGCTTACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTCAGCTTCATAGGATTCTTCTCCTACAAAGTTGATCCTACCAGATCATTTTCCAGTTTTCTAAACTCACGCTTCACAGAAATTATTCTATCCAATATTCGAGACGCTAGCCTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGTCAAATGAAATCCCGAATTTGACCCTCTTCAATCCTGAACACGCCGAGTCTTGGTGCAATGGACTTAGTAAAGAGAAAATTATCCGATGTTATCGGTTAATGCAACCGTTAATGGAGGAGAGTCCATGGAGAGAGCCCCCAAAAGTGATACCCCAGCTCCGAGTGATGGTCCGAGCTGGGTTGAGGTACAGTGACTCATCCTCCTCGTTTTCCTCGTCATCAAGGTTGCCTTTTAAAAGGAGGAAATTGAATAATTGTGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGCTAAGAGCTGACGAATAA 1011 45.6 MSISSFSGCIIDSKLLCDEDSSGIFSGGLPEYSSDFESPASSEDSIASFIEDERHFVPGIDYFSRFQSQSLDSSARADSIAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPGTSGWLMQLLSVACLSLAAKMEEPLVPSFLELQIEGAKYIFEPRTVRRMELLVLTTLNWRLRSVTPFSFIGFFSYKVDPTRSFSSFLNSRFTEIILSNIRDASLLEYWPSCIAAAALLCASNEIPNLTLFNPEHAESWCNGLSKEKIIRCYRLMQPLMEESPWREPPKVIPQLRVMVRAGLRYSDSSSSFSSSSRLPFKRRKLNNCVWVEDDKENSKLRADE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14952378 14955727 + Sed0012559.1 Sed11g0784 729430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0784 336 Pfam Cyclin, C-terminal domain 178 277 IPR004367 -
Sed11g0784 336 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Sed11g0784 336 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Sed11g0784 336 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Sed11g0784 336 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Sed11g0784 336 Gene3D - 59 176 - -
Sed11g0784 336 PANTHER CYCLINS 40 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed11g0784 336 Gene3D - 48 239 - -
Sed11g0784 336 FunFam D2/4-type cyclin 59 176 - -
Sed11g0784 336 SMART Cyclin_C_2 178 313 IPR004367 -
Sed11g0784 336 SUPERFAMILY Cyclin-like 159 273 IPR036915 -
Sed11g0784 336 SMART cyclin_7 81 169 IPR013763 -
Sed11g0784 336 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0187 Sed-Chr4:1317654 Sed11g0784 Sed-Chr11:14952378 1.20E-44 dispersed
Sed04g0653 Sed-Chr4:5135902 Sed11g0784 Sed-Chr11:14952378 2.00E-105 dispersed
Sed06g1605 Sed-Chr6:40862026 Sed11g0784 Sed-Chr11:14952378 2.20E-111 dispersed
Sed11g0784 Sed-Chr11:14952378 Sed13g0425 Sed-Chr13:2798669 2.00E-41 dispersed
Sed11g0784 Sed-Chr11:14952378 Sed11g0785 Sed-Chr11:14952378 3.30E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0784 K18810 - csv:101210686 561.607