Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0784 | ATGTCGATCTCTTCTTTCTCCGGCTGCATCATTGACTCGAAACTACTCTGTGATGAGGACTCCTCTGGTATTTTCTCCGGAGGCTTGCCGGAGTACTCATCGGACTTTGAATCGCCGGCCAGCAGTGAGGATTCCATAGCCAGTTTCATAGAGGACGAGAGGCACTTTGTTCCTGGGATTGATTACTTCTCGCGCTTTCAGTCTCAATCGCTGGATTCTTCCGCTAGAGCCGACTCCATTGCATGGATTCTCAAGGTTCAAGCGTATTACGGTTTTCAACCACTCACAGCATACCTCTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGGAACAAGTGGATGGCTAATGCAGCTTCTTTCAGTGGCATGTTTGTCACTTGCAGCTAAAATGGAAGAACCTCTTGTTCCTTCTTTTCTAGAACTTCAGATTGAAGGAGCAAAGTATATATTTGAACCTAGAACAGTACGTAGGATGGAGCTTCTTGTGCTTACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTCAGCTTCATAGGATTCTTCTCCTACAAAGTTGATCCTACCAGATCATTTTCCAGTTTTCTAAACTCACGCTTCACAGAAATTATTCTATCCAATATTCGAGACGCTAGCCTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGTCAAATGAAATCCCGAATTTGACCCTCTTCAATCCTGAACACGCCGAGTCTTGGTGCAATGGACTTAGTAAAGAGAAAATTATCCGATGTTATCGGTTAATGCAACCGTTAATGGAGGAGAGTCCATGGAGAGAGCCCCCAAAAGTGATACCCCAGCTCCGAGTGATGGTCCGAGCTGGGTTGAGGTACAGTGACTCATCCTCCTCGTTTTCCTCGTCATCAAGGTTGCCTTTTAAAAGGAGGAAATTGAATAATTGTGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGCTAAGAGCTGACGAATAA | 1011 | 45.6 | MSISSFSGCIIDSKLLCDEDSSGIFSGGLPEYSSDFESPASSEDSIASFIEDERHFVPGIDYFSRFQSQSLDSSARADSIAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPGTSGWLMQLLSVACLSLAAKMEEPLVPSFLELQIEGAKYIFEPRTVRRMELLVLTTLNWRLRSVTPFSFIGFFSYKVDPTRSFSSFLNSRFTEIILSNIRDASLLEYWPSCIAAAALLCASNEIPNLTLFNPEHAESWCNGLSKEKIIRCYRLMQPLMEESPWREPPKVIPQLRVMVRAGLRYSDSSSSFSSSSRLPFKRRKLNNCVWVEDDKENSKLRADE | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14952378 | 14955727 | + | Sed0012559.1 | Sed11g0784 | 729430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0784 | 336 | Pfam | Cyclin, C-terminal domain | 178 | 277 | IPR004367 | - | |
Sed11g0784 | 336 | CDD | CYCLIN_AtCycD-like_rpt2 | 178 | 268 | - | - | |
Sed11g0784 | 336 | SUPERFAMILY | Cyclin-like | 39 | 175 | IPR036915 | - | |
Sed11g0784 | 336 | CDD | CYCLIN_AtCycD-like_rpt1 | 75 | 173 | - | - | |
Sed11g0784 | 336 | ProSitePatterns | Cyclins signature. | 76 | 107 | IPR048258 | - | |
Sed11g0784 | 336 | Gene3D | - | 59 | 176 | - | - | |
Sed11g0784 | 336 | PANTHER | CYCLINS | 40 | 272 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed11g0784 | 336 | Gene3D | - | 48 | 239 | - | - | |
Sed11g0784 | 336 | FunFam | D2/4-type cyclin | 59 | 176 | - | - | |
Sed11g0784 | 336 | SMART | Cyclin_C_2 | 178 | 313 | IPR004367 | - | |
Sed11g0784 | 336 | SUPERFAMILY | Cyclin-like | 159 | 273 | IPR036915 | - | |
Sed11g0784 | 336 | SMART | cyclin_7 | 81 | 169 | IPR013763 | - | |
Sed11g0784 | 336 | Pfam | Cyclin, N-terminal domain | 45 | 176 | IPR006671 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0187 | Sed-Chr4:1317654 | Sed11g0784 | Sed-Chr11:14952378 | 1.20E-44 | dispersed | |
Sed04g0653 | Sed-Chr4:5135902 | Sed11g0784 | Sed-Chr11:14952378 | 2.00E-105 | dispersed | |
Sed06g1605 | Sed-Chr6:40862026 | Sed11g0784 | Sed-Chr11:14952378 | 2.20E-111 | dispersed | |
Sed11g0784 | Sed-Chr11:14952378 | Sed13g0425 | Sed-Chr13:2798669 | 2.00E-41 | dispersed | |
Sed11g0784 | Sed-Chr11:14952378 | Sed11g0785 | Sed-Chr11:14952378 | 3.30E-116 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0784 | K18810 | - | csv:101210686 | 561.607 |