Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0819 ATGGAATCGAGGGTTTTGCTGGATTTCCAAAATCCCATTGAAGGTGCCATTTCCAAAATTGAATTTGCCCCTCATTCCAACAATCTCGTCGTTTCTTCCTGGGACTCTGGTCTTCGCTTATACGATGTGGATAATTCTGCTCTCAGACTTGAAGCTCCCTCCGAGGCTGCGCTGCTGGATTGTTGTTTCCAGGACGACTCACTGGCTTTCAGCGTTGGTTCTGATTGCTTCATCAGGAGGTATGACTTGCAATCAGGAATTTTTGGAACCATTGGAAAACATGATGATATTGCAACCCATATCAGATATTCTGATCAAACATGCCAAATAGTAACAGCAGGTTTGGATGGAAAGATATTGTTGTGGGACACACGTAGAGAAAAATCTTTTTCATCTGTGAGAAATATGGGTTCAGATGTGGTGTCCATGTCTCTCTCTGGATTTACTTTAATTGTGGCTTCTGGAGTATGTGTATATTCACTGGACTTACGTAACCTAAAGAAACCAATTCAACCGACAGATTCTTATATGAAAGTTCCAGTAGCTTGTGTAAGCTCAGTTCCTTATAGTGAAGGATTTGCAATTGGGTCAGTAGATGGACGTGTAGCTTTAGAGATTGCATGTGTGGACCAAACAGACGACATTAGATATATTTTCTGGTGTCACCCAAAGGCAAAGGCTAAAAGAAACCATTTGGAGTCGGTGAATGATATTGGATTTAATCCGGTACACCATGGTGCCTTTGCTACGGGTGATAATGCAGGCTTTGTTAGCATATGGGATTTCCAAAGCAAGAGACGAATACTTGAGTTGCCCAGATTTCCGAATAGTGTGGCTTCTTTGTCTTACAACTGCGGAGGACAACTTTTGGCTGTTGCTTCAAGCTGTACGTATCAAGAAGCTAAAGAAAGTCAATTTGTCCAGACGGTGGCTGATTTATGA 942 42.04 MESRVLLDFQNPIEGAISKIEFAPHSNNLVVSSWDSGLRLYDVDNSALRLEAPSEAALLDCCFQDDSLAFSVGSDCFIRRYDLQSGIFGTIGKHDDIATHIRYSDQTCQIVTAGLDGKILLWDTRREKSFSSVRNMGSDVVSMSLSGFTLIVASGVCVYSLDLRNLKKPIQPTDSYMKVPVACVSSVPYSEGFAIGSVDGRVALEIACVDQTDDIRYIFWCHPKAKAKRNHLESVNDIGFNPVHHGAFATGDNAGFVSIWDFQSKRRILELPRFPNSVASLSYNCGGQLLAVASSCTYQEAKESQFVQTVADL 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17715268 17741206 - Sed0005166.3 Sed11g0819 729465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0819 313 Gene3D - 4 311 IPR015943 GO:0005515(InterPro)
Sed11g0819 313 SUPERFAMILY WD40 repeat-like 12 295 IPR036322 GO:0005515(InterPro)
Sed11g0819 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 132 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 SMART WD40_4 2 42 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 SMART WD40_4 84 123 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 SMART WD40_4 222 261 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 ProSitePatterns Trp-Asp (WD) repeats signature. 110 124 IPR019775 -
Sed11g0819 313 PANTHER MRNA EXPORT FACTOR AND BUB3 9 304 - GO:0000776(PANTHER)|GO:0005654(PANTHER)|GO:0007094(PANTHER)|GO:0009524(PANTHER)|GO:0043130(PANTHER)|GO:1990298(PANTHER)
Sed11g0819 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 270 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 Pfam WD domain, G-beta repeat 15 42 IPR001680 GO:0005515(InterPro)
Sed11g0819 313 Pfam WD domain, G-beta repeat 90 123 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0819 K02180 - - csv:101216492 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0817 Sed-Chr11:17710898 Sed11g0819 Sed-Chr11:17715268 8.30E-178 dispersed
Sed11g0819 Sed-Chr11:17715268 Sed13g0446 Sed-Chr13:3035696 2.40E-52 dispersed
Sed11g0818 Sed-Chr11:17710898 Sed11g0819 Sed-Chr11:17715268 6.20E-112 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g696 Blo02g00931 . . Bda08g00679 . . Bma05g00651 . . . . . . . . . . . . . . . . . Cla10g00999 . . Cco10g1017 . . . Cone12ag1050 Cone8ag1082 . . . . . . . . . . . Bpe05g00473 . . Sed11g0819 Cmo04g00484 Cmo16g00343 . . . . Cpe14g00270 Cpe01g00405 Bhi11g01139 Tan01g0641 Cmetu09g1555 . Hepe07g0419 Mch10g0449 . . . . . . . . Lsi03g01027 . . Cme07g02177
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003570 0 3 1 1 1 2 1 2 1 1 1 2 1 2 2 1 2 2 1 2 1 1 3 1 1 0 3 3 1 1 44