Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0820 ATGGCGGGGAAGCCCAACCCGGGTTCCATCAGGGTTCCGTACAGGAACCTTCAGGATGATGCAGAAGTGGAGATGGTGGCCGTGGACGAACACCAACTCCATGGGATCGATCTCAATTCTCCTCCTTCTGATAGATGTCCCAATGGCAGCTCGCCTCATGTTAGATCTACGCCAAATCATTTGATTATCTTGATTCTCAGTTGTACGATCGCGGCCGGCGTTCAATTCGGTTGGGCATTGCAGCTTTCCCTGCTAACTCCCTATATTCAGACACTAGGAATTGGGCATGCATTTTCTTCGTTTATTTGGCTCTGTGGTCCCATCACTGGTCTTGTGGTTCAACCATGTGTCGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCCTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACGAAGGAACATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATTTTCGTAATAGGTTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCGGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGGTTTTCAGCAGGAGCTAGTGGAAATTGGCACAATTGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTACTGCTGTGCTTTTTCTAACCATATGTACACTTGTTACCATATACTTTGCGGACGAAGTTCCAATTACTTCTGTAGATCAACCACCACGTTTATCCGATTCTGCTCCTCTTTTGAATGTGAATGAACAAAAAAATAGTCCTAATATTTTAAAACCAGAACTTAACAGTTTGAATTTGAATGGGAGCAATGTTGACTTTGGCCATCAAGAAAATACAAATTTGAAAAATTCAGATTCAATAATGGAGGGAAATCACAGTGACGGCTATAATGATGGACCTTCAGCAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCACCGGCCATGCATTCAGTGCTTACTGTGATGGCTCTTAGCTGGTTATCATGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTATGACTGAGGAGCAGGTTTATGAGCAAGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCCGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCGATGTGTCAGCGCATGGGAACAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGGCGGGAACTACTATTATCAGTTTGATATCCGTCAGTCGATACTCTAAAGGAATTGAACATATTATTGGGGCAAATTCGACAATAAAAAATGCTGCCTTGGTTGTTTTTGCTCTTCTGGGTTTTCCTCTTGCTATAACGTATAGCGTTCCATTCTCTTTGACAGCAGAATTGACTGCTGATTCTGGTGGTGGACAAGGATTGGCTATAGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCCCTGGGTGCTGGGCCATGGGATGCTTTATTCAGTGGAGGAAACACTCCTGCATTTGCTCTGGCTTCTGTATGTGCGCTTGCGGCTGGAGTTGTTGCCGTTCTTAGACTGCCTAATCACATCAACAATTCTTTCAAATCCACAGGTTTTCATTTTGGTTAA 1809 43.06 MAGKPNPGSIRVPYRNLQDDAEVEMVAVDEHQLHGIDLNSPPSDRCPNGSSPHVRSTPNHLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHNWFPFLLSDACCEACGNLKAAFLTAVLFLTICTLVTIYFADEVPITSVDQPPRLSDSAPLLNVNEQKNSPNILKPELNSLNLNGSNVDFGHQENTNLKNSDSIMEGNHSDGYNDGPSAVVVKLLTSLRHLPPAMHSVLTVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSMTEEQVYEQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGTRLVWAMSNFIVFACMAGTTIISLISVSRYSKGIEHIIGANSTIKNAALVVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNTPAFALASVCALAAGVVAVLRLPNHINNSFKSTGFHFG 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17748739 17766751 + Sed0005819.1 Sed11g0820 729466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0820 602 FunFam Sucrose transport protein SUT5 374 594 - -
Sed11g0820 602 Pfam Major Facilitator Superfamily 71 475 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed11g0820 602 SUPERFAMILY MFS general substrate transporter 49 589 IPR036259 -
Sed11g0820 602 PANTHER SUGAR TRANSPORTER 62 584 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed11g0820 602 CDD MFS_SLC45_SUC 64 584 - -
Sed11g0820 602 FunFam Sucrose transporter SUC2 62 286 - -
Sed11g0820 602 Gene3D MFS general substrate transporter like domains 57 585 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1987 Sed-Chr8:34226962 Sed11g0820 Sed-Chr11:17748739 2.30E-110 dispersed
Sed10g1185 Sed-Chr10:20250542 Sed11g0820 Sed-Chr11:17748739 2.30E-301 dispersed
Sed11g0820 Sed-Chr11:17748739 Sed11g0822 Sed-Chr11:17748739 0.00E+00 dispersed
Sed11g0820 Sed-Chr11:17748739 Sed11g0821 Sed-Chr11:17748739 3.50E-302 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0820 K15378 - csv:101205348 1058.13