Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0821 ATGGCGGGGAAGCCCAACCCGGGTTCCATCAGGGTTCCGTACAGGAACCTTCAGGATGATGCAGAAGTGGAGATGGTGGCCGTGGACGAACACCAACTCCATGGGATCGATCTCAATTCTCCTCCTTCTGATAGATGTCCCAATGGCAGCTCGCCTCATGTTAGATCTACGCCAAATCATTTGATTATCTTGATTCTCAGTTGTACGATCGCGGCCGGCGTTCAATTCGGTTGGGCATTGCAGCTTTCCCTGCTAACTCCCTATATTCAGACACTAGGAATTGGGCATGCATTTTCTTCGTTTATTTGGCTCTGTGGTCCCATCACTGGTCTTGTGGTTCAACCATGTGTCGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCCTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACGAAGGAACATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATTTTCGTAATAGGTTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCGGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGGTTTTCAGCAGGAGCTAGTGGAAATTGGCACAATTGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTACTGCTGTGCTTTTTCTAACCATATGTACACTTGTTACCATATACTTTGCGGACGAAGTTCCAATTACTTCTGTAGATCAACCACCACGTTTATCCGATTCTGCTCCTCTTTTGAATGTGAATGAACAAAAAAATAGTCCTAATATTTTAAAACCAGAACTTAACAGTTTGAATTTGAATGGGAGCAATGTTGACTTTGGCCATCAAGAAAATACAAATTTGAAAAATTCAGATTCAATAATGGAGGGAAATCACAGTGACGGCTATAATGATGGACCTTCAGCAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCACCGGCCATGCATTCAGTGCTTACTGTGATGGCTCTTAGCTGGTTATCATGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTATGACTGAGGAGCAGGTTTATGAGCAAGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCCGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCGATGTGTCAGCGCATGGGAACAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGGCGGGAACTACTATTATCAGTTTGATATCCGTCAGTCGATACTCTAAAGGAATTGAACATATTATTGGGGCAAATTCGACAATAAAAAATGCTGCCTTGGTTGTTTTTGCTCTTCTGGGTTTTCCTCTTGCTGTAAATGGCACGGTTTCTTTTTAA 1554 42.6 MAGKPNPGSIRVPYRNLQDDAEVEMVAVDEHQLHGIDLNSPPSDRCPNGSSPHVRSTPNHLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHNWFPFLLSDACCEACGNLKAAFLTAVLFLTICTLVTIYFADEVPITSVDQPPRLSDSAPLLNVNEQKNSPNILKPELNSLNLNGSNVDFGHQENTNLKNSDSIMEGNHSDGYNDGPSAVVVKLLTSLRHLPPAMHSVLTVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSMTEEQVYEQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGTRLVWAMSNFIVFACMAGTTIISLISVSRYSKGIEHIIGANSTIKNAALVVFALLGFPLAVNGTVSF 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17748739 17766751 + Sed0005819.2 Sed11g0821 729467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0821 517 CDD MFS_SLC45_SUC 64 517 - -
Sed11g0821 517 Gene3D MFS general substrate transporter like domains 57 516 IPR036259 -
Sed11g0821 517 Pfam Major Facilitator Superfamily 71 507 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed11g0821 517 SUPERFAMILY MFS general substrate transporter 49 472 IPR036259 -
Sed11g0821 517 PANTHER SUGAR TRANSPORTER 62 516 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed11g0821 517 FunFam Sucrose transporter SUC2 62 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0821 K15378 - - csv:101205348 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0820 Sed-Chr11:17748739 Sed11g0821 Sed-Chr11:17748739 3.50E-302 tandem
Sed11g0821 Sed-Chr11:17748739 Sed11g0822 Sed-Chr11:17748739 2.30E-302 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1987 . 12 485 Sucrose Transporter Gene Family AT1G22710 60.5 4.3e-176 615.5
Sed01g1239 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.4 8.5e-140 495.0
Sed08g1987 . 8 480 Sucrose Transporter Gene Family AT2G14670 60.8 5.6e-173 605.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 4.6e-135 479.2
Sed08g1987 . 13 410 Sucrose Transporter Gene Family AT1G66570 58.8 3.0e-144 509.6
Sed11g0820 . 147 602 Sucrose Transporter Gene Family AT2G02860 68.6 4.7e-182 635.2
Sed10g1185 . 150 602 Sucrose Transporter Gene Family AT2G02860 68.7 2.9e-179 625.9
Sed11g0822 . 147 549 Sucrose Transporter Gene Family AT2G02860 67.5 8.2e-158 554.7
Sed11g0821 . 147 517 Sucrose Transporter Gene Family AT2G02860 65.0 5.0e-139 492.3
Sed08g1987 . 15 480 Sucrose Transporter Gene Family AT5G06170 58.5 3.2e-160 562.8
Sed08g1987 . 13 480 Sucrose Transporter Gene Family AT5G43610 60.6 5.8e-170 595.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 6.2e-132 468.8
Sed01g1239 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 9.8e-205 710.7
Sed08g1987 . 19 486 Sucrose Transporter Gene Family AT1G09960 51.5 6.1e-130 462.2
Sed08g1987 . 5 486 Sucrose Transporter Gene Family AT1G71880 58.3 3.4e-165 579.3
Sed01g1239 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 1.3e-135 481.1
Sed08g1987 . 13 485 Sucrose Transporter Gene Family AT1G71890 57.1 5.1e-161 565.5
Sed08g1987 . 5 486 Sucrose Transporter Gene Family AT1G71880 58.3 3.4e-165 579.3
Sed01g1239 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 1.3e-135 481.1
Sed08g1987 . 12 485 Sucrose Transporter Gene Family AT1G22710 60.5 4.3e-176 615.5
Sed01g1239 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.4 8.5e-140 495.0
Sed11g0820 . 147 602 Sucrose Transporter Gene Family AT2G02860 68.6 4.7e-182 635.2
Sed10g1185 . 150 602 Sucrose Transporter Gene Family AT2G02860 68.7 2.9e-179 625.9
Sed11g0822 . 147 549 Sucrose Transporter Gene Family AT2G02860 67.5 8.2e-158 554.7
Sed11g0821 . 147 517 Sucrose Transporter Gene Family AT2G02860 65.0 5.0e-139 492.3
Sed01g1239 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 9.8e-205 710.7
Sed08g1987 . 19 486 Sucrose Transporter Gene Family AT1G09960 51.5 6.1e-130 462.2
Sed08g1987 . 13 485 Sucrose Transporter Gene Family AT1G71890 57.1 5.1e-161 565.5
Sed08g1987 . 13 480 Sucrose Transporter Gene Family AT5G43610 60.6 5.8e-170 595.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 6.2e-132 468.8
Sed08g1987 . 13 410 Sucrose Transporter Gene Family AT1G66570 58.8 3.0e-144 509.6
Sed08g1987 . 8 480 Sucrose Transporter Gene Family AT2G14670 60.8 5.6e-173 605.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 4.6e-135 479.2
Sed08g1987 . 15 480 Sucrose Transporter Gene Family AT5G06170 58.5 3.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41