Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0821 ATGGCGGGGAAGCCCAACCCGGGTTCCATCAGGGTTCCGTACAGGAACCTTCAGGATGATGCAGAAGTGGAGATGGTGGCCGTGGACGAACACCAACTCCATGGGATCGATCTCAATTCTCCTCCTTCTGATAGATGTCCCAATGGCAGCTCGCCTCATGTTAGATCTACGCCAAATCATTTGATTATCTTGATTCTCAGTTGTACGATCGCGGCCGGCGTTCAATTCGGTTGGGCATTGCAGCTTTCCCTGCTAACTCCCTATATTCAGACACTAGGAATTGGGCATGCATTTTCTTCGTTTATTTGGCTCTGTGGTCCCATCACTGGTCTTGTGGTTCAACCATGTGTCGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCCTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACGAAGGAACATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATTTTCGTAATAGGTTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCGGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGGTTTTCAGCAGGAGCTAGTGGAAATTGGCACAATTGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTACTGCTGTGCTTTTTCTAACCATATGTACACTTGTTACCATATACTTTGCGGACGAAGTTCCAATTACTTCTGTAGATCAACCACCACGTTTATCCGATTCTGCTCCTCTTTTGAATGTGAATGAACAAAAAAATAGTCCTAATATTTTAAAACCAGAACTTAACAGTTTGAATTTGAATGGGAGCAATGTTGACTTTGGCCATCAAGAAAATACAAATTTGAAAAATTCAGATTCAATAATGGAGGGAAATCACAGTGACGGCTATAATGATGGACCTTCAGCAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCACCGGCCATGCATTCAGTGCTTACTGTGATGGCTCTTAGCTGGTTATCATGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTATGACTGAGGAGCAGGTTTATGAGCAAGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCCGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCGATGTGTCAGCGCATGGGAACAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGGCGGGAACTACTATTATCAGTTTGATATCCGTCAGTCGATACTCTAAAGGAATTGAACATATTATTGGGGCAAATTCGACAATAAAAAATGCTGCCTTGGTTGTTTTTGCTCTTCTGGGTTTTCCTCTTGCTGTAAATGGCACGGTTTCTTTTTAA 1554 42.6 MAGKPNPGSIRVPYRNLQDDAEVEMVAVDEHQLHGIDLNSPPSDRCPNGSSPHVRSTPNHLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHNWFPFLLSDACCEACGNLKAAFLTAVLFLTICTLVTIYFADEVPITSVDQPPRLSDSAPLLNVNEQKNSPNILKPELNSLNLNGSNVDFGHQENTNLKNSDSIMEGNHSDGYNDGPSAVVVKLLTSLRHLPPAMHSVLTVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSMTEEQVYEQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGTRLVWAMSNFIVFACMAGTTIISLISVSRYSKGIEHIIGANSTIKNAALVVFALLGFPLAVNGTVSF 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17748739 17766751 + Sed0005819.2 Sed11g0821 729467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0821 517 CDD MFS_SLC45_SUC 64 517 - -
Sed11g0821 517 Gene3D MFS general substrate transporter like domains 57 516 IPR036259 -
Sed11g0821 517 Pfam Major Facilitator Superfamily 71 507 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed11g0821 517 SUPERFAMILY MFS general substrate transporter 49 472 IPR036259 -
Sed11g0821 517 PANTHER SUGAR TRANSPORTER 62 516 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed11g0821 517 FunFam Sucrose transporter SUC2 62 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0820 Sed-Chr11:17748739 Sed11g0821 Sed-Chr11:17748739 3.50E-302 tandem
Sed11g0821 Sed-Chr11:17748739 Sed11g0822 Sed-Chr11:17748739 2.30E-302 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0821 K15378 - csv:101205348 909.827