Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0823 ATGTCTTCGTCTAGACCCAGCCAGTCTTCTAGCAACTCTGGGCGATCAAGACATAGTACTAGAGTTATTGCTCAAACATCTGTTGATGCTAAGCTCCAAGCAGACTTTGAGGAATCAGGGAATTCATTTGATTACTCAAGTTCAGTGCGTGTGACTAGTGATGTTAGTGGAAATCTACAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAAAAAGGAAAGCTTATCCAACCATTTGGTTGCTTATTAGCCTTAGACGACAAAACATTCAAGGTTATCGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTCAGGACTATTTTCACTGCACCTAGTGCATCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTCGTGCATTGCAAAACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCCGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGGGCCCTACAATCGTATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGCAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGTCTTGAGCCATATCTTGGTTTACATTATCCAGCCACTGACATTCCTCAAGCTTCACGCTTTTTGTTTATGAAGAATAAGGTCCGCCTAATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCGCACAGTTGCCATTCACAGTATATGGAAAACATGAACTCGATTGCATCTTTGGTTTTAGCCATAGTGATTAATGAAGGGGATGAAGATGGCGAGGCCCCTGCTTTGCAGCAACAAAAGAGAAATAGATTATGGGGCTTGGTAGTATGTCATAATTCGAGTCCCAGATTCGTTCCTTTCCCTCTTAGGTATGCTTGTGAGTTTTTAGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAGAATATTCTACGTACGCAAACACTCTTGTGTGACATGCTAATGCGTGATGCCCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAGATCTGATGGGGCTGCCTTATTATATAAGAAGAAAATTTGGAGATTGGGAATAACACCCAGTGACTTCCAGTTGCAGGACATTGCCTCGTGGCTTTCTGAGTATCATATGGATTCAACAGGGTTAAGTACTGATAGCTTGTATGATGCAGGATACCCGGGAGCTCTTGCTCTTGGTGATGAAGTGTGTGGGATGGCAGCTGTAAGGATAACTGATAATGATATGATATTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGTTGGGGTGGTGCAAAGCATGGACATGGTGAAAAGGACGATGGAAGAATAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTTAAGACAAGAAGTATACCCTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATTCTCAGAAATTCTTTCAAAGATGCAGATACAATTGAGGTAAATAGAAAATCGATTCAAATGACTCTGGGTGACCTAAAAATTGAAGGTAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAGTTAATGGGTGGAATTCAAAAATTGCTGAACTGACTGGACTTCCTGTTGATAAAGCTATTGGCATGCATCTGCTTACGTTAGTGGAAGACTCTTCTGTAGAAGTTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAGTTTGAGATCAAGACACATGGTTCACATATTGAAGTTGGCTCCATTAGACTAGTTGTTAATGCTTGTGCAAGTAGGGACTTGCGTGAAACTGTTGTGGGAGTGTGTTTTGTAGCACAAGATATCACGGGCCAGAAGATGGTTATGGACAAGTTCACCCGATTAGAAGGCGATTACAAAGCTATTGTACTAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAGTTTGGATGGTGCTCTGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAAGTTTTTGGTGCTCACAAATCATGTTGTCGTTTAAAAAATCAAGAAGTATTTGTTAATCTTGGGGTTATTTTGAATAATGCCACGAGTGGTCATGATCCTGAAAAGGTTTCCTTTGGTTTCTTTGCTCGGAATGGGATGTACATTGAATGTCTTCTTTGTGTGAATAAGATCTTGGACAAAGACGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAGGCATTAAATGTCCAACGATTATGTGAGCAAACTGCATTGAAGAGATTAAGAGCGTTGGGATACATAAAAAGGCAGATACAAAATCCCCTTTCTGGGATTGTCTTTACAAGGAGATTATTGGAGCGCACTGAGATGGAAACTGAACAAAAAAAGATTCTGCATACTAGCGCACACTGTCAAAAGCAGATCTCCAAGGTTCTTGATGAGTCAGACCTTGACAAAATTATTGATGGTTTCATTGATTTGGAAATGGTTGAGTTTAAATTGCATGAAGTGTTGACGGTTTCAACTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGGATCCAGATAGTTAATGAGACTACAGAAGAGGCCATGTCCGACGAGACTTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGATATCAGTTAGTTACGCCTCAGCGGGAGGTAGAGTAACGATTTCAACCAACTTAACCAAGGATCAATTAGGGAAGTCTGTTCATCTGGTGCATTTGGAGTTCAGAATAACGTATGCGGGAGGAGGTATTCCAGAATCGTTGCTGAACGAGATGTTTGGAAGTGAGGAGGACGCATCGGAGGAGGGTTTTAGTCTTCTCATAAGTAGAAAACTGGTGCAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCAGGTAAGTCGAGCTTCATCATAACTGCTGAGCTTGCTGCAGCACACAAGTCAAGAACGTAG 3375 41.24 MSSSRPSQSSSNSGRSRHSTRVIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGNLQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQASRFLFMKNKVRLIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHSQYMENMNSIASLVLAIVINEGDEDGEAPALQQQKRNRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVRSDGAALLYKKKIWRLGITPSDFQLQDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITDNDMIFWFRSHTASEIRWGGAKHGHGEKDDGRIMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNSFKDADTIEVNRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSVNGWNSKIAELTGLPVDKAIGMHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRETVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVLNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEVFVNLGVILNNATSGHDPEKVSFGFFARNGMYIECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNVQRLCEQTALKRLRALGYIKRQIQNPLSGIVFTRRLLERTEMETEQKKILHTSAHCQKQISKVLDESDLDKIIDGFIDLEMVEFKLHEVLTVSTSQVMIKSKGKGIQIVNETTEEAMSDETLYGDSLRLQQVLADFLLISVSYASAGGRVTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVQLMNGDVRYMREAGKSSFIITAELAAAHKSRT 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17778534 17800741 + Sed0008560.1 Sed11g0823 729469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0823 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Sed11g0823 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Sed11g0823 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Sed11g0823 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Sed11g0823 1124 FunFam Phytochrome 612 743 - -
Sed11g0823 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1115 IPR003594 -
Sed11g0823 1124 SUPERFAMILY GAF domain-like 408 585 - -
Sed11g0823 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Sed11g0823 1124 CDD PAS 627 733 IPR000014 -
Sed11g0823 1124 CDD HATPase_Phy-like 1005 1116 IPR044767 -
Sed11g0823 1124 MobiDBLite consensus disorder prediction 1 24 - -
Sed11g0823 1124 SMART pas_2 618 684 IPR000014 -
Sed11g0823 1124 SMART pas_2 748 817 IPR000014 -
Sed11g0823 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1110 IPR036890 -
Sed11g0823 1124 ProSiteProfiles Histidine kinase domain profile. 900 1118 IPR005467 -
Sed11g0823 1124 Pfam GAF domain 220 399 IPR003018 GO:0005515(InterPro)
Sed11g0823 1124 PANTHER OS08G0260000 PROTEIN 1 995 - -
Sed11g0823 1124 Gene3D PAS domain 74 321 - -
Sed11g0823 1124 Gene3D - 199 561 IPR029016 -
Sed11g0823 1124 SUPERFAMILY GAF domain-like 198 397 - -
Sed11g0823 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Sed11g0823 1124 Gene3D - 405 578 IPR043150 -
Sed11g0823 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Sed11g0823 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Sed11g0823 1124 Coils Coil 397 417 - -
Sed11g0823 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Sed11g0823 1124 FunFam Phytochrome 405 534 - -
Sed11g0823 1124 SMART HisKA_10 893 954 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed11g0823 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Sed11g0823 1124 SMART gaf_1 218 410 IPR003018 GO:0005515(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 Gene3D PAS domain 763 877 - -
Sed11g0823 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Sed11g0823 1124 Gene3D PAS domain 611 747 - -
Sed11g0823 1124 Gene3D - 929 1112 IPR036890 -
Sed11g0823 1124 CDD PAS 760 871 IPR000014 -
Sed11g0823 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355(InterPro)
Sed11g0823 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0823 K12120 - - csv:101208491 2061.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2127 Sed-Chr5:34312797 Sed11g0823 Sed-Chr11:17778534 0.00E+00 dispersed
Sed05g2128 Sed-Chr5:34312797 Sed11g0823 Sed-Chr11:17778534 0.00E+00 dispersed
Sed11g0823 Sed-Chr11:17778534 Sed11g0858 Sed-Chr11:20293608 0.00E+00 dispersed
Sed11g0823 Sed-Chr11:17778534 Sed11g0824 Sed-Chr11:17779233 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56