Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0823 ATGTCTTCGTCTAGACCCAGCCAGTCTTCTAGCAACTCTGGGCGATCAAGACATAGTACTAGAGTTATTGCTCAAACATCTGTTGATGCTAAGCTCCAAGCAGACTTTGAGGAATCAGGGAATTCATTTGATTACTCAAGTTCAGTGCGTGTGACTAGTGATGTTAGTGGAAATCTACAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAAAAAGGAAAGCTTATCCAACCATTTGGTTGCTTATTAGCCTTAGACGACAAAACATTCAAGGTTATCGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTCAGGACTATTTTCACTGCACCTAGTGCATCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTCGTGCATTGCAAAACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCCGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGGGCCCTACAATCGTATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGCAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGTCTTGAGCCATATCTTGGTTTACATTATCCAGCCACTGACATTCCTCAAGCTTCACGCTTTTTGTTTATGAAGAATAAGGTCCGCCTAATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCGCACAGTTGCCATTCACAGTATATGGAAAACATGAACTCGATTGCATCTTTGGTTTTAGCCATAGTGATTAATGAAGGGGATGAAGATGGCGAGGCCCCTGCTTTGCAGCAACAAAAGAGAAATAGATTATGGGGCTTGGTAGTATGTCATAATTCGAGTCCCAGATTCGTTCCTTTCCCTCTTAGGTATGCTTGTGAGTTTTTAGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAGAATATTCTACGTACGCAAACACTCTTGTGTGACATGCTAATGCGTGATGCCCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAGATCTGATGGGGCTGCCTTATTATATAAGAAGAAAATTTGGAGATTGGGAATAACACCCAGTGACTTCCAGTTGCAGGACATTGCCTCGTGGCTTTCTGAGTATCATATGGATTCAACAGGGTTAAGTACTGATAGCTTGTATGATGCAGGATACCCGGGAGCTCTTGCTCTTGGTGATGAAGTGTGTGGGATGGCAGCTGTAAGGATAACTGATAATGATATGATATTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGTTGGGGTGGTGCAAAGCATGGACATGGTGAAAAGGACGATGGAAGAATAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTTAAGACAAGAAGTATACCCTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATTCTCAGAAATTCTTTCAAAGATGCAGATACAATTGAGGTAAATAGAAAATCGATTCAAATGACTCTGGGTGACCTAAAAATTGAAGGTAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAGTTAATGGGTGGAATTCAAAAATTGCTGAACTGACTGGACTTCCTGTTGATAAAGCTATTGGCATGCATCTGCTTACGTTAGTGGAAGACTCTTCTGTAGAAGTTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAGTTTGAGATCAAGACACATGGTTCACATATTGAAGTTGGCTCCATTAGACTAGTTGTTAATGCTTGTGCAAGTAGGGACTTGCGTGAAACTGTTGTGGGAGTGTGTTTTGTAGCACAAGATATCACGGGCCAGAAGATGGTTATGGACAAGTTCACCCGATTAGAAGGCGATTACAAAGCTATTGTACTAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAGTTTGGATGGTGCTCTGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAAGTTTTTGGTGCTCACAAATCATGTTGTCGTTTAAAAAATCAAGAAGTATTTGTTAATCTTGGGGTTATTTTGAATAATGCCACGAGTGGTCATGATCCTGAAAAGGTTTCCTTTGGTTTCTTTGCTCGGAATGGGATGTACATTGAATGTCTTCTTTGTGTGAATAAGATCTTGGACAAAGACGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAGGCATTAAATGTCCAACGATTATGTGAGCAAACTGCATTGAAGAGATTAAGAGCGTTGGGATACATAAAAAGGCAGATACAAAATCCCCTTTCTGGGATTGTCTTTACAAGGAGATTATTGGAGCGCACTGAGATGGAAACTGAACAAAAAAAGATTCTGCATACTAGCGCACACTGTCAAAAGCAGATCTCCAAGGTTCTTGATGAGTCAGACCTTGACAAAATTATTGATGGTTTCATTGATTTGGAAATGGTTGAGTTTAAATTGCATGAAGTGTTGACGGTTTCAACTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGGATCCAGATAGTTAATGAGACTACAGAAGAGGCCATGTCCGACGAGACTTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGATATCAGTTAGTTACGCCTCAGCGGGAGGTAGAGTAACGATTTCAACCAACTTAACCAAGGATCAATTAGGGAAGTCTGTTCATCTGGTGCATTTGGAGTTCAGAATAACGTATGCGGGAGGAGGTATTCCAGAATCGTTGCTGAACGAGATGTTTGGAAGTGAGGAGGACGCATCGGAGGAGGGTTTTAGTCTTCTCATAAGTAGAAAACTGGTGCAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCAGGTAAGTCGAGCTTCATCATAACTGCTGAGCTTGCTGCAGCACACAAGTCAAGAACGTAG 3375 41.24 MSSSRPSQSSSNSGRSRHSTRVIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGNLQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQASRFLFMKNKVRLIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHSQYMENMNSIASLVLAIVINEGDEDGEAPALQQQKRNRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVRSDGAALLYKKKIWRLGITPSDFQLQDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITDNDMIFWFRSHTASEIRWGGAKHGHGEKDDGRIMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNSFKDADTIEVNRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSVNGWNSKIAELTGLPVDKAIGMHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRETVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVLNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEVFVNLGVILNNATSGHDPEKVSFGFFARNGMYIECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNVQRLCEQTALKRLRALGYIKRQIQNPLSGIVFTRRLLERTEMETEQKKILHTSAHCQKQISKVLDESDLDKIIDGFIDLEMVEFKLHEVLTVSTSQVMIKSKGKGIQIVNETTEEAMSDETLYGDSLRLQQVLADFLLISVSYASAGGRVTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVQLMNGDVRYMREAGKSSFIITAELAAAHKSRT 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17778534 17800741 + Sed0008560.1 Sed11g0823 729469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0823 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Sed11g0823 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Sed11g0823 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Sed11g0823 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Sed11g0823 1124 FunFam Phytochrome 612 743 - -
Sed11g0823 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1115 IPR003594 -
Sed11g0823 1124 SUPERFAMILY GAF domain-like 408 585 - -
Sed11g0823 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Sed11g0823 1124 CDD PAS 627 733 IPR000014 -
Sed11g0823 1124 CDD HATPase_Phy-like 1005 1116 IPR044767 -
Sed11g0823 1124 MobiDBLite consensus disorder prediction 1 24 - -
Sed11g0823 1124 SMART pas_2 618 684 IPR000014 -
Sed11g0823 1124 SMART pas_2 748 817 IPR000014 -
Sed11g0823 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1110 IPR036890 -
Sed11g0823 1124 ProSiteProfiles Histidine kinase domain profile. 900 1118 IPR005467 -
Sed11g0823 1124 Pfam GAF domain 220 399 IPR003018 GO:0005515(InterPro)
Sed11g0823 1124 PANTHER OS08G0260000 PROTEIN 1 995 - -
Sed11g0823 1124 Gene3D PAS domain 74 321 - -
Sed11g0823 1124 Gene3D - 199 561 IPR029016 -
Sed11g0823 1124 SUPERFAMILY GAF domain-like 198 397 - -
Sed11g0823 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Sed11g0823 1124 Gene3D - 405 578 IPR043150 -
Sed11g0823 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Sed11g0823 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Sed11g0823 1124 Coils Coil 397 417 - -
Sed11g0823 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Sed11g0823 1124 FunFam Phytochrome 405 534 - -
Sed11g0823 1124 SMART HisKA_10 893 954 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed11g0823 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Sed11g0823 1124 SMART gaf_1 218 410 IPR003018 GO:0005515(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0823 1124 Gene3D PAS domain 763 877 - -
Sed11g0823 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Sed11g0823 1124 Gene3D PAS domain 611 747 - -
Sed11g0823 1124 Gene3D - 929 1112 IPR036890 -
Sed11g0823 1124 CDD PAS 760 871 IPR000014 -
Sed11g0823 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355(InterPro)
Sed11g0823 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2127 Sed-Chr5:34312797 Sed11g0823 Sed-Chr11:17778534 0.00E+00 dispersed
Sed05g2128 Sed-Chr5:34312797 Sed11g0823 Sed-Chr11:17778534 0.00E+00 dispersed
Sed11g0823 Sed-Chr11:17778534 Sed11g0858 Sed-Chr11:20293608 0.00E+00 dispersed
Sed11g0823 Sed-Chr11:17778534 Sed11g0824 Sed-Chr11:17779233 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0823 K12120 - csv:101208491 2061.57