Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g0824 | ATGTCTTCGTCTAGACCCAGCCAGTCTTCTAGCAACTCTGGGCGATCAAGACATAGTACTAGAGTTATTGCTCAAACATCTGTTGATGCTAAGCTCCAAGCAGACTTTGAGGAATCAGGGAATTCATTTGATTACTCAAGTTCAGTGCGTGTGACTAGTGATGTTAGTGGAAATCTACAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAAAAAGGAAAGCTTATCCAACCATTTGGTTGCTTATTAGCCTTAGACGACAAAACATTCAAGGTTATCGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTCAGGACTATTTTCACTGCACCTAGTGCATCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTCGTGCATTGCAAAACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCCGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGGGCCCTACAATCGTATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGCAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGTCTTGAGCCATATCTTGGTTTACATTATCCAGCCACTGACATTCCTCAAGCTTCACGCTTTTTGTTTATGAAGAATAAGGTCCGCCTAATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCGCACAGTTGCCATTCACAGTATATGGAAAACATGAACTCGATTGCATCTTTGGTTTTAGCCATAGTGATTAATGAAGGGGATGAAGATGGCGAGGCCCCTGCTTTGCAGCAACAAAAGAGAAATAGATTATGGGGCTTGGTAGTATGTCATAATTCGAGTCCCAGATTCGTTCCTTTCCCTCTTAGGTATGCTTGTGAGTTTTTAGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAGAATATTCTACGTACGCAAACACTCTTGTGTGACATGCTAATGCGTGATGCCCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAGATCTGATGGGGCTGCCTTATTATATAAGAAGAAAATTTGGAGATTGGGAATAACACCCAGTGACTTCCAGTTGCAGGACATTGCCTCGTGGCTTTCTGAGTATCATATGGATTCAACAGGGTTAAGTACTGATAGCTTGTATGATGCAGGATACCCGGGAGCTCTTGCTCTTGGTGATGAAGTGTGTGGGATGGCAGCTGTAAGGATAACTGATAATGATATGATATTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGTTGGGGTGGTGCAAAGCATGGACATGGTGAAAAGGACGATGGAAGAATAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTTAAGACAAGAAGTATACCCTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATTCTCAGAAATTCTTTCAAAGATGCAGATACAATTGAGGTAAATAGAAAATCGATTCAAATGACTCTGGGTGACCTAAAAATTGAAGGTAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAGTTAATGGGTGGAATTCAAAAATTGCTGAACTGACTGGACTTCCTGTTGATAAAGCTATTGGCATGCATCTGCTTACGTTAGTGGAAGACTCTTCTGTAGAAGTTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAGTTTGAGATCAAGACACATGGTTCACATATTGAAGTTGGCTCCATTAGACTAGTTGTTAATGCTTGTGCAAGTAGGGACTTGCGTGAAACTGTTGTGGGAGTGTGTTTTGTAGCACAAGATATCACGGGCCAGAAGATGGTTATGGACAAGTTCACCCGATTAGAAGGCGATTACAAAGCTATTGTACTAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAGTTTGGATGGTGCTCTGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAAGTTTTTGGTGCTCACAAATCATGTTGTCGTTTAAAAAATCAAGAAGTATTTGTTAATCTTGGGGTTATTTTGAATAATGCCACGAGTGGTCATGATCCTGAAAAGGTTTCCTTTGGTTTCTTTGCTCGGAATGGGATGTACATTGAATGTCTTCTTTGTGTGAATAAGATCTTGGACAAAGACGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAGGCATTAAATGTCCAACGATTATGTGAGCAAACTGCATTGAAGAGATTAAGAGCGTTGGGATACATAAAAAGGCAGATACAAAATCCCCTTTCTGGGATTGTCTTTACAAGGAGATTATTGGAGCGCACTGAGATGGAAACTGAACAAAAAAAGATTCTGCATACTAGCGCACACTGTCAAAAGCAGATCTCCAAGGTTCTTGATGAGTCAGACCTTGACAAAATTATTGATGGTTTCATTGATTTGGAAATGGTTGAGTTTAAATTGCATGAAGTGTTGACGGTTTCAACTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGGATCCAGATAGTTAATGAGACTACAGAAGAGGCCATGTCCGACGAGACTTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGATATCAGTTAGTTACGCCTCAGCGGGAGGTAGAGTAACGATTTCAACCAACTTAACCAAGGATCAATTAGGGAAGTCTGTTCATCTGGTGCATTTGGAGTTCAGAATAACGTATGCGGGAGGAGGTATTCCAGAATCGTTGCTGAACGAGATGTTTGGAAGTGAGGAGGACGCATCGGAGGAGGGTTTTAGTCTTCTCATAAGTAGAAAACTGGTGCAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCAGGTAAGTCGAGCTTCATCATAACTGCTGAGCTTGCTGCAGCACACAAGTCAAGAACGTAG | 3375 | 41.24 | MSSSRPSQSSSNSGRSRHSTRVIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGNLQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQASRFLFMKNKVRLIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHSQYMENMNSIASLVLAIVINEGDEDGEAPALQQQKRNRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVRSDGAALLYKKKIWRLGITPSDFQLQDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITDNDMIFWFRSHTASEIRWGGAKHGHGEKDDGRIMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNSFKDADTIEVNRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSVNGWNSKIAELTGLPVDKAIGMHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRETVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVLNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEVFVNLGVILNNATSGHDPEKVSFGFFARNGMYIECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNVQRLCEQTALKRLRALGYIKRQIQNPLSGIVFTRRLLERTEMETEQKKILHTSAHCQKQISKVLDESDLDKIIDGFIDLEMVEFKLHEVLTVSTSQVMIKSKGKGIQIVNETTEEAMSDETLYGDSLRLQQVLADFLLISVSYASAGGRVTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVQLMNGDVRYMREAGKSSFIITAELAAAHKSRT | 1124 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 17779233 | 17800741 | + | Sed0008560.2 | Sed11g0824 | 729470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g0824 | 1124 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 218 | 390 | IPR016132 | - | |
| Sed11g0824 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 763 | 869 | IPR035965 | - | |
| Sed11g0824 | 1124 | SMART | HKATPase_4 | 1006 | 1118 | IPR003594 | - | |
| Sed11g0824 | 1124 | ProSiteProfiles | PAS repeat profile. | 749 | 801 | IPR000014 | - | |
| Sed11g0824 | 1124 | FunFam | Phytochrome | 612 | 743 | - | - | |
| Sed11g0824 | 1124 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1006 | 1115 | IPR003594 | - | |
| Sed11g0824 | 1124 | SUPERFAMILY | GAF domain-like | 408 | 585 | - | - | |
| Sed11g0824 | 1124 | Pfam | Phytochrome region | 413 | 587 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | NCBIfam | PAS domain S-box protein | 623 | 739 | IPR000014 | - | |
| Sed11g0824 | 1124 | CDD | PAS | 627 | 733 | IPR000014 | - | |
| Sed11g0824 | 1124 | CDD | HATPase_Phy-like | 1005 | 1116 | IPR044767 | - | |
| Sed11g0824 | 1124 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Sed11g0824 | 1124 | SMART | pas_2 | 618 | 684 | IPR000014 | - | |
| Sed11g0824 | 1124 | SMART | pas_2 | 748 | 817 | IPR000014 | - | |
| Sed11g0824 | 1124 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 950 | 1110 | IPR036890 | - | |
| Sed11g0824 | 1124 | ProSiteProfiles | Histidine kinase domain profile. | 900 | 1118 | IPR005467 | - | |
| Sed11g0824 | 1124 | Pfam | GAF domain | 220 | 399 | IPR003018 | GO:0005515(InterPro) | |
| Sed11g0824 | 1124 | PANTHER | OS08G0260000 PROTEIN | 1 | 995 | - | - | |
| Sed11g0824 | 1124 | Gene3D | PAS domain | 74 | 321 | - | - | |
| Sed11g0824 | 1124 | Gene3D | - | 199 | 561 | IPR029016 | - | |
| Sed11g0824 | 1124 | SUPERFAMILY | GAF domain-like | 198 | 397 | - | - | |
| Sed11g0824 | 1124 | Pfam | PAS fold | 69 | 185 | IPR013654 | GO:0006355(InterPro) | |
| Sed11g0824 | 1124 | Gene3D | - | 405 | 578 | IPR043150 | - | |
| Sed11g0824 | 1124 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 318 | 327 | IPR013516 | - | |
| Sed11g0824 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 622 | 729 | IPR035965 | - | |
| Sed11g0824 | 1124 | Coils | Coil | 397 | 417 | - | - | |
| Sed11g0824 | 1124 | PIRSF | Phytochrome_conventional | 1 | 1124 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Sed11g0824 | 1124 | FunFam | Phytochrome | 405 | 534 | - | - | |
| Sed11g0824 | 1124 | SMART | HisKA_10 | 893 | 954 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Sed11g0824 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 74 | 186 | IPR035965 | - | |
| Sed11g0824 | 1124 | SMART | gaf_1 | 218 | 410 | IPR003018 | GO:0005515(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 638 | 653 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 133 | 155 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 515 | 534 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 619 | 635 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 548 | 566 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 430 | 450 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 318 | 339 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 731 | 751 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 233 | 252 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | PRINTS | Phytochrome signature | 711 | 728 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed11g0824 | 1124 | Gene3D | PAS domain | 763 | 877 | - | - | |
| Sed11g0824 | 1124 | ProSiteProfiles | PAS repeat profile. | 616 | 686 | IPR000014 | - | |
| Sed11g0824 | 1124 | Gene3D | PAS domain | 611 | 747 | - | - | |
| Sed11g0824 | 1124 | Gene3D | - | 929 | 1112 | IPR036890 | - | |
| Sed11g0824 | 1124 | CDD | PAS | 760 | 871 | IPR000014 | - | |
| Sed11g0824 | 1124 | Pfam | PAS fold | 619 | 733 | IPR013767 | GO:0006355(InterPro) | |
| Sed11g0824 | 1124 | Pfam | PAS fold | 749 | 871 | IPR013767 | GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed11g0824 | Sed-Chr11:17779233 | Sed11g0858 | Sed-Chr11:20293608 | 0.00E+00 | dispersed | |
| Sed11g0823 | Sed-Chr11:17778534 | Sed11g0824 | Sed-Chr11:17779233 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g0824 | K12120 | - | csv:101208491 | 2061.57 |